PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC19400_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 608aa    MW: 69404.1 Da    PI: 7.1447
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC19400_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.42.9e-1699180286
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr..tsessstcpyfdqle 86 
                  W+ +evlaL+++r+ +e+++ +       We+ s+k++e gf+rsp++Ck+k+e+ ++ry + +++ + +  ++ ++ ++++f++++
  RrC19400_p1  99 WCSDEVLALLRFRSTVENWFPEF-----TWEHTSRKLAEVGFKRSPQECKDKFEEEERRYFNSNNNTNAHhmSNYNKGNYRLFSEVD 180
                  ********************998.....9*****************************99999888777734466666788887765 PP
2trihelix98.55.7e-31447545186
     trihelix   1 rWtkqevlaLiearr.....emeerlrrgk..............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 
                  rW+++evlaLi++rr     +      ++               +  plWe++skkm e g++rs+k+Ckekwen+nk+++k+k+ +kkr + +s+tc
  RrC19400_p1 447 RWPRDEVLALINIRRsissmN-----DDDHrkediplpssssstKVVPLWERISKKMLEIGYKRSAKRCKEKWENINKYFRKTKDVNKKR-PLDSRTC 538
                  8**************555441.....332222344555555555889******************************************8.9****** PP

     trihelix  80 pyfdqle 86 
                  pyf+ql+
  RrC19400_p1 539 PYFHQLT 545
                  *****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.5E-1197163No hitNo description
PROSITE profilePS500905.50698150IPR017877Myb-like domain
PfamPF138378.7E-19446546No hitNo description
CDDcd122031.33E-24446525No hitNo description
PROSITE profilePS500906.737447518IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MFDGGVPEQI HRFIASAQPP PPLHPHQPAA ERSLPFPVSF ASFSTDHQAN MLNLDGPKII  60
HHHHHHHHHG IKDSGATAEW MGHTDHDGDN HRHHHHHPWC SDEVLALLRF RSTVENWFPE  120
FTWEHTSRKL AEVGFKRSPQ ECKDKFEEEE RRYFNSNNNT NAHHMSNYNK GNYRLFSEVD  180
EFYHHGHADE EQVVSSQVGE NQNKRNSSLE GKGNVEETGQ DLLEDKTDHQ DQCQVDESSM  240
GNKINSIENV VKVGNVEDDA KSSSSASLMM IMRDNKKRKR KKKKERFGVL KGFCEGLVRN  300
VIAQQEEMHK NLLEDMMKKE GEKIAREEAW KKQEMERLNR EVEIRAQEQA MASDRNTSII  360
KFISKFTDDN NHDDGNNKVQ SPNPSQDSSS IVLSNPQGSR KCQTSSSLQT LTPQNPSLEP  420
TSPKTLKTKI HNPKAPKGDE QGDIGKRWPR DEVLALINIR RSISSMNDDD HRKEDIPLPS  480
SSSSTKVVPL WERISKKMLE IGYKRSAKRC KEKWENINKY FRKTKDVNKK RPLDSRTCPY  540
FHQLTALYSQ PSTGTTTTVT ADTSVEEIVT RPEENRVGSG DPDIPTAMHV DGVGEKSNVQ  600
FSGFDLAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275280KKRKRK
2275282KKRKRKKK
3275283KKRKRKKKK
4276284KRKRKKKKE
5277281RKRKK
6277283RKRKKKK
7277284RKRKKKKE
8279284RKKKKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018477420.10.0PREDICTED: trihelix transcription factor GTL2
SwissprotQ8H1810.0GTL2_ARATH; Trihelix transcription factor GTL2
TrEMBLA0A078IRA50.0A0A078IRA5_BRANA; BnaC07g49430D protein
STRINGBo7g093250.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82682838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.10.0Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]