PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC193_p5
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 295aa    MW: 33018.2 Da    PI: 6.5117
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC193_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61.1e-161468148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+d+++ +G+g+W+  ++  g       + R++k+c++rw +yl
        RrC193_p5 14 KGPWTPEEDQKLIDYIRVHGPGNWRILPKNAGnivqtkgLQRCGKSCRLRWTNYL 68
                     79***************************************************97 PP
2Myb_DNA-binding54.23.3e-1774118147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr++ eE+e +++++  +G++ W++Ia++++ gRt++++k++w+++
        RrC193_p5  74 RGRFSFEEEETIIQLHSVMGNK-WSAIAARLP-GRTDNEIKNHWNTH 118
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.3E-25571IPR009057Homeodomain-like
PROSITE profilePS5129417.385968IPR017930Myb domain
SuperFamilySSF466893.71E-3011115IPR009057Homeodomain-like
SMARTSM007171.8E-131370IPR001005SANT/Myb domain
PfamPF002493.5E-151468IPR001005SANT/Myb domain
CDDcd001673.67E-121668No hitNo description
PROSITE profilePS5129425.80469123IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.4E-2772124IPR009057Homeodomain-like
SMARTSM007172.7E-1673121IPR001005SANT/Myb domain
PfamPF002491.7E-1574118IPR001005SANT/Myb domain
CDDcd001672.27E-1276119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGRLPCCDKN GVKKGPWTPE EDQKLIDYIR VHGPGNWRIL PKNAGNIVQT KGLQRCGKSC  60
RLRWTNYLRP DIKRGRFSFE EEETIIQLHS VMGNKWSAIA ARLPGRTDNE IKNHWNTHIR  120
KRLVRSGIDP VTHSPRLDLL DLSSLLAAIL NQPNFSSVAT HAPSLLNPDV LRLASLLLPP  180
QQPLPNPNTL YTSNLDQNLQ TPNTSVSSQD TQPQAECRTP TKDETSYFEP VNARLEVGPS  240
DVLPPLSESL DLDSLMSTPN YSPQQNNIEA EANSSSLFDF GFPDNLTFDD FTGLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-30141237108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in salt stress response. Confers tolerance to salt stress (PubMed:22575450). Involved in distinct cellular processes in response to osmotic stress, including control of primary metabolism and negative regulation of short-term transcriptional responses to osmotic stress (PubMed:19211694). Can activate the steps necessary for aliphatic suberin synthesis and deposition of cell wall-associated suberin-like lamellae. Involved in the production of aliphatic suberin under abiotic stress conditions (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:22575450, ECO:0000269|PubMed:25060192}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:19211694, PubMed:25060192). Induced by osmotic stress (PubMed:19211694). Induced by abscisic acid (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:25060192}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0765480.0KR076548.1 Brassica napus MYB transcription factor 41 (MYB41.1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013673934.10.0transcription factor MYB41-like
SwissprotQ9M0J51e-148MYB41_ARATH; Transcription factor MYB41
TrEMBLM4EBX20.0M4EBX2_BRARP; Uncharacterized protein
STRINGBra026281.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28110.11e-132myb domain protein 41
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]