PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC193_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 298aa    MW: 33935.7 Da    PI: 5.436
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC193_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-18147196356
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                y+GVr++  +g+WvAeIr p++   r+r +lg+f+taeeAa a+++ + kl+g+
  RrC193_p4 147 YRGVRQRQ-WGKWVAEIRKPRS---RARLWLGTFDTAEEAAMAYDRQAFKLRGH 196
                9****999.**********954...4**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.6E-31146204IPR001471AP2/ERF domain
PROSITE profilePS5103223.67146203IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-23146204IPR016177DNA-binding domain
SMARTSM003805.5E-38146209IPR001471AP2/ERF domain
PfamPF008471.7E-13147196IPR001471AP2/ERF domain
CDDcd000182.13E-33147204No hitNo description
PRINTSPR003672.8E-11147158IPR001471AP2/ERF domain
PRINTSPR003672.8E-11169185IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MDFDEELNLC ITKGKTIDPS LGEASSTTSP RSIKKMKNPD HRSKPYLPFS SFSSSNSLPA  60
FPFSLDPTFQ NQQQQQQQQL GYVPINQQNN ATIQGHNQMI SFSPQIPQQQ QQYMFRYWSD  120
TLNLSPRGRM MMMNQESVIP YSSTRLYRGV RQRQWGKWVA EIRKPRSRAR LWLGTFDTAE  180
EAAMAYDRQA FKLRGHNATL NFPERFVDKE IEANDETEAS SSLHQKQSET PQLNEPKEGN  240
LDSKEVAVSD GGVEEGMAEA WFNAVAAGWG PESPLWDDLD NSQFSQSSTS SCPMRPFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21147205362ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00458DAPTransfer from AT4G28140Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018470119.10.0PREDICTED: ethylene-responsive transcription factor ERF054-like
SwissprotQ9M0J31e-134ERF54_ARATH; Ethylene-responsive transcription factor ERF054
TrEMBLM4EBX10.0M4EBX1_BRARP; Uncharacterized protein
STRINGBra026280.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.11e-109ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]