PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC192_p9
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 240aa    MW: 26886 Da    PI: 4.9126
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC192_p9genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.82.5e-131565148
                     TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed +lvd  +  Gg    +W+ +++  g++R++k+c++rw +yl
        RrC192_p9 15 KGPWTADEDGKLVDFLRTRGGSggwCWRDVPKLAGLRRCGKSCRLRWTNYL 65
                     79******************99***************************97 PP

2Myb_DNA-binding56.28.1e-1871115147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg +++eE +l +d++ qlG++ W++Ia++++ gRt++++k++w+++
        RrC192_p9  71 RGLFSEEEIQLVIDLHSQLGNR-WSKIAAELP-GRTDNDIKNYWNTH 115
                      7889******************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-17668IPR009057Homeodomain-like
PROSITE profilePS5129412.3221065IPR017930Myb domain
SuperFamilySSF466892.43E-2412112IPR009057Homeodomain-like
SMARTSM007177.3E-61467IPR001005SANT/Myb domain
PfamPF002492.4E-111565IPR001005SANT/Myb domain
CDDcd001671.00E-41765No hitNo description
PROSITE profilePS5129426.98166120IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-2669121IPR009057Homeodomain-like
SMARTSM007173.7E-1770118IPR001005SANT/Myb domain
PfamPF002496.5E-1671115IPR001005SANT/Myb domain
CDDcd001675.18E-1374116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGGRKPCCDE VGLRKGPWTA DEDGKLVDFL RTRGGSGGWC WRDVPKLAGL RRCGKSCRLR  60
WTNYLRPDLK RGLFSEEEIQ LVIDLHSQLG NRWSKIAAEL PGRTDNDIKN YWNTHIKRKL  120
IRMGIDPNTH HPFDQQKVNS EKEETTLVNG QTPRDEAEVP VGLQNDTSAG NLNHLADVDD  180
DSIQPWSFLM ENDGGGCSSA GELTMLLSGD ITSSCSSSSS LWLKYGEFGY EDFELGCFDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-27131205108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00577DAPTransfer from AT5G62320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489804.11e-167PREDICTED: protein ODORANT1
RefseqXP_018489805.11e-167PREDICTED: protein ODORANT1
SwissprotQ50EX61e-68ODO1_PETHY; Protein ODORANT1
TrEMBLA0A0D3BFT81e-157A0A0D3BFT8_BRAOL; Uncharacterized protein
STRINGBo3g107740.11e-158(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62320.11e-129myb domain protein 99
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]