PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC192_p9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB | ||||||||
Protein Properties | Length: 240aa MW: 26886 Da PI: 4.9126 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.8 | 2.5e-13 | 15 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +lvd + Gg +W+ +++ g++R++k+c++rw +yl RrC192_p9 15 KGPWTADEDGKLVDFLRTRGGSggwCWRDVPKLAGLRRCGKSCRLRWTNYL 65 79******************99***************************97 PP | |||||||
2 | Myb_DNA-binding | 56.2 | 8.1e-18 | 71 | 115 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +++eE +l +d++ qlG++ W++Ia++++ gRt++++k++w+++ RrC192_p9 71 RGLFSEEEIQLVIDLHSQLGNR-WSKIAAELP-GRTDNDIKNYWNTH 115 7889******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-17 | 6 | 68 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.322 | 10 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.43E-24 | 12 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.3E-6 | 14 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-11 | 15 | 65 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.00E-4 | 17 | 65 | No hit | No description |
PROSITE profile | PS51294 | 26.981 | 66 | 120 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-26 | 69 | 121 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-17 | 70 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.5E-16 | 71 | 115 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.18E-13 | 74 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MGGRKPCCDE VGLRKGPWTA DEDGKLVDFL RTRGGSGGWC WRDVPKLAGL RRCGKSCRLR 60 WTNYLRPDLK RGLFSEEEIQ LVIDLHSQLG NRWSKIAAEL PGRTDNDIKN YWNTHIKRKL 120 IRMGIDPNTH HPFDQQKVNS EKEETTLVNG QTPRDEAEVP VGLQNDTSAG NLNHLADVDD 180 DSIQPWSFLM ENDGGGCSSA GELTMLLSGD ITSSCSSSSS LWLKYGEFGY EDFELGCFDD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-27 | 13 | 120 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00577 | DAP | Transfer from AT5G62320 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018489804.1 | 1e-167 | PREDICTED: protein ODORANT1 | ||||
Refseq | XP_018489805.1 | 1e-167 | PREDICTED: protein ODORANT1 | ||||
Swissprot | Q50EX6 | 1e-68 | ODO1_PETHY; Protein ODORANT1 | ||||
TrEMBL | A0A0D3BFT8 | 1e-157 | A0A0D3BFT8_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g107740.1 | 1e-158 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62320.1 | 1e-129 | myb domain protein 99 |
Publications ? help Back to Top | |||
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