PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC19205_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 125aa    MW: 14256.4 Da    PI: 11.833
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC19205_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.4e-18753252
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkk 52
                 +++GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ 
  RrC19205_p1  7 RFRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARL 53
                 69******9.**********8.....334*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.24E-32666No hitNo description
PROSITE profilePS5103220.271764IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-20766IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-33764IPR001471AP2/ERF domain
PfamPF008475.6E-11754IPR001471AP2/ERF domain
SMARTSM003802.2E-38770IPR001471AP2/ERF domain
PRINTSPR003675.6E-11819IPR001471AP2/ERF domain
PRINTSPR003675.6E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MARPQQRFRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCSPRAR  60
TNFPYNPNGV PSSSSKLLSA TLTAKLHKCY MASLQMTKQA QTQTQSTRLR PLSLPHSRTL  120
TALTM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-16668467ATERF1
3gcc_A1e-16668467ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0456591e-101AY045659.1 Arabidopsis thaliana AT5g25190/F21J6_103 mRNA, complete cds.
GenBankAY0596641e-101AY059664.1 Arabidopsis thaliana AT5g25190/F21J6_103 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437040.17e-82PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW51e-64ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A3N6R5F73e-77A0A3N6R5F7_BRACR; Uncharacterized protein
STRINGBo2g158960.13e-76(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.14e-44ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]