PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1899_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TCP
Protein Properties Length: 349aa    MW: 39285 Da    PI: 9.0996
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1899_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP140.51.3e-431032293133
         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssgkaaksaa.ksk 98 
                 +k+drhski+T++g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL+ ++k++ik+  ++ + s        ++++ ++s     ++a++++ k +
  RrC1899_p1 103 KKRDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKPSKTIEWLISKSKASIKQVKESAAASG--GggGGKHEHLQVS-----ENANDETlKVS 194
                 699************************************************************44444..2233333444444.....33444443777 PP

         TCP  99 ksqksaasalnlakesrakarararertrekmrik 133
                 k++++    + ++kesr+kar+rarert  km+++
  RrC1899_p1 195 KRKTKRVDDSCKKKESREKARERARERTMVKMKMR 229
                 77777777788899*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-35103228IPR005333Transcription factor, TCP
PROSITE profilePS5136935.549104162IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.015208225IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MFPSIDTNGY DLFDPFSLHE ATMLPSFTTH IQSPSSHHHY PLPSFPFSSD FLDESVLISK  60
FLLQQQDDVD SPRKFCKELE QEKNNEWVDG TTSEKVSPRR TGKKRDRHSK ICTAQGPRDR  120
RMRLSLQIAR KFFDLQDMLG FDKPSKTIEW LISKSKASIK QVKESAAASG GGGGGKHEHL  180
QVSENANDET LKVSKRKTKR VDDSCKKKES REKARERARE RTMVKMKMRL SGLVDTSKTF  240
SDPNQESRKT KVTGGAQVEG QNLEQERSAT NLNMDSVSII EKFLGLTSES SSTIFGDSEE  300
SYTSLGLIRG TVSTAGVVIP REHNTTSTAS VDKERNHIST FSLYDYLCN
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents axillary bud outgrowth. May also delay early axillary bud development. Probably involved in the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469472.10.0PREDICTED: transcription factor TCP12
SwissprotA0AQW41e-140TCP12_ARATH; Transcription factor TCP12
TrEMBLA0A291I3370.0A0A291I337_BRARR; TCP12
TrEMBLA0A398AAA80.0A0A398AAA8_BRACM; Uncharacterized protein
STRINGBo2g061250.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116322533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-124TCP domain protein 12