PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC18904_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 226aa    MW: 24799.7 Da    PI: 9.9901
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC18904_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.5e-192575155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++y+GVr ++ +gr++Ae+rdp +   + r++lg+f++a eAa+a+++a+++l+g
  RrC18904_p1 25 PRYRGVRKRP-WGRFAAEVRDPLK---KSRVWLGTFDSAVEAARAYDQAARNLRG 75
                 68********.**********743...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.5E-132575IPR001471AP2/ERF domain
CDDcd000185.91E-302585No hitNo description
PROSITE profilePS5103222.7872683IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-212685IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-312683IPR001471AP2/ERF domain
SMARTSM003801.6E-362689IPR001471AP2/ERF domain
PRINTSPR003675.2E-102738IPR001471AP2/ERF domain
PRINTSPR003675.2E-104965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MRKGRVSSAV PPALPVTANG SAKEPRYRGV RKRPWGRFAA EVRDPLKKSR VWLGTFDSAV  60
EAARAYDQAA RNLRGPKAKT NFPIDCSPSS PLQQPPLYHR SSAANRNQID PFMDHRLYGG  120
GGEQQQQIIS RPASSSMSST VKSFSGQRPS SSSVAKQATT AKRYPRTPPV APEDCHSGCD  180
SSSSVVDDGD DIVSRRKPPF QFDLNYPPLD GVDLFDDDLH CTDLRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-212192981Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00366DAPTransfer from AT3G20310Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490777.11e-145PREDICTED: ethylene-responsive transcription factor 7
SwissprotQ9LDE43e-96ERF83_ARATH; Ethylene-responsive transcription factor 7
TrEMBLA0A397ZJA71e-121A0A397ZJA7_BRACM; Uncharacterized protein
STRINGBra035792.1-P1e-120(Brassica rapa)
STRINGBo5g109800.11e-116(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.14e-83ethylene response factor 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Giuntoli B,Perata P
    Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles.
    Plant Physiol., 2018. 176(2): p. 1143-1155
    [PMID:29269576]