PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC1881_p4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | HSF | ||||||||
Protein Properties | Length: 467aa MW: 51572.1 Da PI: 4.4374 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.7 | 1.2e-35 | 29 | 120 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d++++e++sws+ +nsfvv+d ef+k LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +++k+ll+ i RrC1881_p4 29 FLSKTYDMVDDPSTNEVVSWSSGNNSFVVWDVPEFSKVFLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRNQKQLLKGIT 116 9****************************************************************999.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+ks RrC1881_p4 117 RRKS 120 **97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 5.3E-38 | 24 | 112 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.2E-57 | 25 | 118 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.99E-34 | 25 | 118 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.2E-19 | 29 | 52 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.9E-30 | 29 | 118 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-19 | 67 | 79 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 68 | 92 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-19 | 80 | 92 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence Send to blast |
MEPVLEPAPS VNSTNPPPIP PPVNTVAPFL SKTYDMVDDP STNEVVSWSS GNNSFVVWDV 60 PEFSKVFLPK YFKHNNFSSF VRQLNTYGFR KVDPDRWEFA NEGFLRNQKQ LLKGITRRKS 120 PHVQQQNQQV QNSSLTACVE VGKFGIAEEE VERLKRDKNV LTQELVRLRH QQQATEHQLQ 180 DAVQKVQAME QRQQQMMSFL AKAVQSPGFL NQLVVLQQSN DGSRQIQGSS NKKRRLPQEA 240 DDVDRQIVKY QPSINEAAQS MLRQFLNMSS SSNESESVSD NPGSFLVGDV PSANSLNSSN 300 TVSGETQAEV SPDSAHSAMN QVPAAGLAHH PQAGLVQGVA AAASWSPESE LLIGCETGNG 360 ECLEPIVAAL GDAVTPEGEG EMRALLNEVP ELPGVQDPFW EQFFADEAPV SGETDETITG 420 SVENSDLAME QELSEWTRDQ QQVNHITEQM GFLSSETHRE GEVVKGI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 4e-24 | 26 | 118 | 26 | 129 | Heat shock factor protein 1 |
5d5v_B | 4e-24 | 26 | 118 | 26 | 129 | Heat shock factor protein 1 |
5d5v_D | 4e-24 | 26 | 118 | 26 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: DNA-binding capacity is reduced by HSBP in vitro. {ECO:0000269|PubMed:20388662}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018446687.1 | 0.0 | PREDICTED: heat stress transcription factor A-1b-like isoform X2 | ||||
Swissprot | O81821 | 0.0 | HFA1B_ARATH; Heat stress transcription factor A-1b | ||||
TrEMBL | A0A3P6D8B4 | 0.0 | A0A3P6D8B4_BRACM; Uncharacterized protein | ||||
STRING | Bo00967s020.1 | 0.0 | (Brassica oleracea) | ||||
STRING | Bo9g151630.1 | 0.0 | (Brassica oleracea) | ||||
STRING | Bo9g161770.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2236 | 23 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16820.2 | 0.0 | heat shock factor 3 |
Publications ? help Back to Top | |||
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