PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC18818_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 239aa    MW: 26476.5 Da    PI: 8.4522
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC18818_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.2e-20132182255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrdp +ng  +r++lg+f tae+Aa a+++a+ +++g
  RrC18818_p1 132 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFETAEDAALAYDKAAFRMRG 182
                  8********.***********9987..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.85E-31131190No hitNo description
Gene3DG3DSA:3.30.730.107.7E-33131191IPR001471AP2/ERF domain
SMARTSM003803.1E-40132196IPR001471AP2/ERF domain
PfamPF008477.9E-14132182IPR001471AP2/ERF domain
PROSITE profilePS5103224.302132190IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-23132191IPR016177DNA-binding domain
PRINTSPR003674.4E-11133144IPR001471AP2/ERF domain
PRINTSPR003674.4E-11156172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MAIESDYAFL ESIRRQLLEE SELRLSESTV AQSCTNVHSV KPVYGRNSSF SKLYPCFSES  60
WGDLPLKEND SEDMLVYGIL NDAFHGGWEP SSSSSDEDRS SFEAVKTENF SAVDSAPAKK  120
TSPVQAPAKG KHYRGVRQRP WGKFAAEIRD PAKNGARVWL GTFETAEDAA LAYDKAAFRM  180
RGSRALLNFP SRVNSGEPDP VRINSKRGSS SENRAPKRRR TVASGQGTDM ELKVKCEVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-43128197170ATERF1
3gcc_A2e-43128197170ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213218RAPKRR
2215221PKRRRTV
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1. Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2), whereas induction by wounding does not need EIN2. Induction by salicylic acid (SA) seems to be independent of PAD4 and NPR1. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0081031e-72AB008103.1 Arabidopsis thaliana AtERF-1 mRNA for ethylene responsive element binding factor 1, complete cds.
GenBankAL1615461e-72AL161546.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 46.
GenBankAY0581741e-72AY058174.1 Arabidopsis thaliana AT4g17500/dl4785w mRNA, complete cds.
GenBankAY0625331e-72AY062533.1 Arabidopsis thaliana Unknown protein mRNA, complete cds.
GenBankBT0025781e-72BT002578.1 Arabidopsis thaliana Unknown protein (At4g17500) mRNA, complete cds.
GenBankCP0026871e-72CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankZ973431e-72Z97343.1 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018467040.11e-161PREDICTED: ethylene-responsive transcription factor 1A-like
SwissprotO803371e-125EF100_ARATH; Ethylene-responsive transcription factor 1A
TrEMBLA0A3P5ZQW01e-149A0A3P5ZQW0_BRACM; Uncharacterized protein
STRINGBra040159.1-P1e-149(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.11e-103ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]