PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC18818_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ERF | ||||||||
Protein Properties | Length: 239aa MW: 26476.5 Da PI: 8.4522 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63 | 6.2e-20 | 132 | 182 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp +ng +r++lg+f tae+Aa a+++a+ +++g RrC18818_p1 132 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFETAEDAALAYDKAAFRMRG 182 8********.***********9987..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.85E-31 | 131 | 190 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 7.7E-33 | 131 | 191 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-40 | 132 | 196 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.9E-14 | 132 | 182 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.302 | 132 | 190 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.99E-23 | 132 | 191 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.4E-11 | 133 | 144 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-11 | 156 | 172 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MAIESDYAFL ESIRRQLLEE SELRLSESTV AQSCTNVHSV KPVYGRNSSF SKLYPCFSES 60 WGDLPLKEND SEDMLVYGIL NDAFHGGWEP SSSSSDEDRS SFEAVKTENF SAVDSAPAKK 120 TSPVQAPAKG KHYRGVRQRP WGKFAAEIRD PAKNGARVWL GTFETAEDAA LAYDKAAFRM 180 RGSRALLNFP SRVNSGEPDP VRINSKRGSS SENRAPKRRR TVASGQGTDM ELKVKCEVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-43 | 128 | 197 | 1 | 70 | ATERF1 |
3gcc_A | 2e-43 | 128 | 197 | 1 | 70 | ATERF1 |
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Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 213 | 218 | RAPKRR |
2 | 215 | 221 | PKRRRTV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:9756931}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1. Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2), whereas induction by wounding does not need EIN2. Induction by salicylic acid (SA) seems to be independent of PAD4 and NPR1. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB008103 | 1e-72 | AB008103.1 Arabidopsis thaliana AtERF-1 mRNA for ethylene responsive element binding factor 1, complete cds. | |||
GenBank | AL161546 | 1e-72 | AL161546.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 46. | |||
GenBank | AY058174 | 1e-72 | AY058174.1 Arabidopsis thaliana AT4g17500/dl4785w mRNA, complete cds. | |||
GenBank | AY062533 | 1e-72 | AY062533.1 Arabidopsis thaliana Unknown protein mRNA, complete cds. | |||
GenBank | BT002578 | 1e-72 | BT002578.1 Arabidopsis thaliana Unknown protein (At4g17500) mRNA, complete cds. | |||
GenBank | CP002687 | 1e-72 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. | |||
GenBank | Z97343 | 1e-72 | Z97343.1 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018467040.1 | 1e-161 | PREDICTED: ethylene-responsive transcription factor 1A-like | ||||
Swissprot | O80337 | 1e-125 | EF100_ARATH; Ethylene-responsive transcription factor 1A | ||||
TrEMBL | A0A3P5ZQW0 | 1e-149 | A0A3P5ZQW0_BRACM; Uncharacterized protein | ||||
STRING | Bra040159.1-P | 1e-149 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17500.1 | 1e-103 | ethylene responsive element binding factor 1 |
Publications ? help Back to Top | |||
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