PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC18799_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 61aa    MW: 7107.84 Da    PI: 6.2266
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC18799_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.45.3e-113160130
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                     +g+WT+eEd+ll ++v+  G g+W+++a +
      RrC18799_p1 31 KGPWTPEEDKLLTEYVASNGEGRWSSVATC 60
                     79*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.472661IPR017930Myb domain
SuperFamilySSF466892.08E-82960IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-113060IPR009057Homeodomain-like
PfamPF002491.5E-93159IPR001005SANT/Myb domain
CDDcd001673.44E-63360No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 61 aa     Download sequence    Send to blast
MLDWKVDQVH QRNHDHEPYQ KPQQQLQGCR KGPWTPEEDK LLTEYVASNG EGRWSSVATC  60
A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619948.14e-31PREDICTED: myb-related protein 340-like
TrEMBLA0A078HEB11e-31A0A078HEB1_BRANA; BnaC02g38100D protein
TrEMBLA0A0D3AWQ31e-31A0A0D3AWQ3_BRAOL; Uncharacterized protein
STRINGBo2g149430.12e-32(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3117522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.12e-20myb domain protein 121