PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC18698_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 309aa    MW: 36099.6 Da    PI: 10.1314
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC18698_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3598.2e-1919109195
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                  ffk++ ++d +++++  lp +f+++ + ++  s +++++ e+g sWev +  +k+++  y+ ++GW++Fv++n L e++fv+F+++g ++f   v 
  RrC18698_p2  19 FFKIFQSADLSSESMRALPYDFMQNLS-DNDLSYKMVIRAEWGSSWEVDI--SKNPKFyYMEKSGWNQFVSDNALGENEFVTFTHTGLMRF--DVN 109
                  99***99****************5554.456999****************..******566669********************9887777..444 PP
2B3345.1e-112243021495
                  T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3  14 grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                  + l lp+ f  eh   + esk+ ++ + ++  sW+v +    + +r+v+++GW + +++  Lk+gD ++Fkl++ +ef l  k
  RrC18698_p2 224 KFLLLPRVFEVEHI--TSESKEYMIHHwKRKCSWNVLC--LVRENRTVFSSGWCRLAREFPLKVGDRCTFKLIKPTEFVLITK 302
                  56889999966664..446788999998999*******..888888**************************99888855544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.63E-1914118IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.3E-1814115IPR015300DNA-binding pseudobarrel domain
CDDcd100171.30E-1618111No hitNo description
PfamPF023625.5E-1719106IPR003340B3 DNA binding domain
PROSITE profilePS5086313.59219114IPR003340B3 DNA binding domain
SMARTSM010192.7E-2019114IPR003340B3 DNA binding domain
SuperFamilySSF1019361.14E-14209300IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.8E-12209300IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.644211305IPR003340B3 DNA binding domain
CDDcd100173.87E-7212295No hitNo description
SMARTSM010198.1E-6214304IPR003340B3 DNA binding domain
PfamPF023622.5E-9223303IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MDCNGRFGRI REERKKLSFF KIFQSADLSS ESMRALPYDF MQNLSDNDLS YKMVIRAEWG  60
SSWEVDISKN PKFYYMEKSG WNQFVSDNAL GENEFVTFTH TGLMRFDVNI YQPDGKEIVT  120
PRKPSPTTFS GIKKKEGESS YKDVKKEDET CESEEGVELE ATMKKAEASK TSKKKSNKVV  180
SYVGVGEPSR GRKKKIETFR KTKIKKVKKG VPEFEITIRK SYLKFLLLPR VFEVEHITSE  240
SKEYMIHHWK RKCSWNVLCL VRENRTVFSS GWCRLAREFP LKVGDRCTFK LIKPTEFVLI  300
TKKSRKETL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172194KKKSNKVVSYVGVGEPSRGRKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893484e-79AC189348.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB042O03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489745.10.0PREDICTED: B3 domain-containing protein At3g17010-like
SwissprotQ9LSP61e-106Y3701_ARATH; B3 domain-containing protein At3g17010
TrEMBLA0A3P6FFX71e-151A0A3P6FFX7_BRAOL; Uncharacterized protein
STRINGXP_006406779.11e-132(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17010.11e-102B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]