PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC18596_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 196aa    MW: 21424.6 Da    PI: 4.5674
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC18596_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.7e-182474155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++ykGVr ++ +g+Wv+eIr p   ++++r++lg++ tae Aa+a++aa ++l+g
  RrC18596_p1 24 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 74
                 59*****998.**********9...336************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.72E-172484No hitNo description
PfamPF008471.5E-112574IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-292584IPR001471AP2/ERF domain
SMARTSM003801.0E-322589IPR001471AP2/ERF domain
PROSITE profilePS5103221.7592583IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-182583IPR016177DNA-binding domain
PRINTSPR003674.2E-92637IPR001471AP2/ERF domain
PRINTSPR003674.2E-94864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009861Biological Processjasmonic acid and ethylene-dependent systemic resistance
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0045088Biological Processregulation of innate immune response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900030Biological Processregulation of pectin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MSPSSSSSSS LSTSSSISKN NMAKKYKGVR MRSWGSWVSE IRAPNQKTRI WLGSYSTAEA  60
AARAYDAALL CLKGSSANNL NFPEISSSLY NTNNGDNKNT INMSPKYIQR VAAAAANADP  120
SSSSVSTSSP LLSSSPSEDL YDVVSMSQYD QQVVSLSESS WYNCFDGDDQ FMLPYLTTPL  180
ADDFFEEGDI RLWNFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1325951480Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00185DAPTransfer from AT1G44830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5608391e-122AY560839.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g44830) mRNA, complete cds.
GenBankBT0252701e-122BT025270.1 Arabidopsis thaliana At1g44830 mRNA, complete cds.
GenBankCP0026841e-122CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankT12C221e-122AC020576.2 Sequence of BAC T12C22 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018483816.11e-100PREDICTED: ethylene-responsive transcription factor ERF014
SwissprotQ9LPE83e-72ERF14_ARATH; Ethylene-responsive transcription factor ERF014
TrEMBLA0A1J3G5986e-92A0A1J3G598_NOCCA; Uncharacterized protein (Fragment)
STRINGBo6g004620.14e-85(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144091822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G44830.16e-69ERF family protein
Publications ? help Back to Top
  1. Zhang H,Hong Y,Huang L,Li D,Song F
    Arabidopsis AtERF014 acts as a dual regulator that differentially modulates immunity against Pseudomonas syringae pv. tomato and Botrytis cinerea.
    Sci Rep, 2016. 6: p. 30251
    [PMID:27445230]