PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC18477_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 330aa    MW: 36514.8 Da    PI: 7.102
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC18477_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.5e-10170217455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L++l+P +    ++   Ka +L + ++Y++sLq
  RrC18477_p1 170 SHSLAERARREKISERMTMLQDLVPGC----NRITGKAVMLDEIINYVQSLQ 217
                  8**************************....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.29E-11164221No hitNo description
SuperFamilySSF474594.84E-17164235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-18166235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.624166216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-7170217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-10172222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEKQTLKYLP LGQSDPFGND NGNGNEGTIG DLLLGRFCNP QDISPRSFSP GIRFPPYPGQ  60
FGSDPDSNKS SSLLDPDSDR FQTPKPNSRK RKSIPVVPVG NGKESPASSS LTASHSKISG  120
ENAVSKDGKR SKHDEAGSSK KVIDKCDDSK DDAKKDYIHV RARRGQATDS HSLAERARRE  180
KISERMTMLQ DLVPGCNRIT GKAVMLDEII NYVQSLQRQV EFLSMKLATV NPRMEFNANA  240
ALSTEMIQPG ESLTQSLYAM ACSEQRLLRH MPRYSDTQFP SGDGFVQAET PGFWENDLQS  300
IVQMGFGDIQ QQHSNNNNCS EPTLQMKLEP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18792SRKRKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0654411e-131AY065441.1 Arabidopsis thaliana putative DNA-binding protein (At3g23690) mRNA, complete cds.
GenBankAY0965361e-131AY096536.1 Arabidopsis thaliana putative DNA-binding protein (At3g23690) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018440038.10.0PREDICTED: transcription factor bHLH77-like
SwissprotQ9LK481e-176BH077_ARATH; Transcription factor bHLH77
TrEMBLM4EHS00.0M4EHS0_BRARP; Uncharacterized protein
STRINGBra028335.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74062039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.11e-154bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]