PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC18473_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 201aa    MW: 22836.9 Da    PI: 4.6487
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC18473_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind446.1e-1443121589
                   HHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHH..HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
  HSF_DNA-bind   5 klyeiledeelkeliswsengnsfvvldeeefakkvLpk..yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                    +ye+++d+++++++sw ++g+sf+v++e+ef  +vLp+   +  + ++SF+ + +  g++kv+++ +        we++ +++ +g
   RrC18473_p1  43 DVYEMVNDPSTDSVVSWGDSGKSFIVWKESEFLGDVLPRclSYDYKDMTSFTTKFHALGYNKVEESVH--------WEYTANYLVRG 121
                   68*************************************667999******************98873........67766666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.4E-636144IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.0E-1641123IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.1E-1242125IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.6E-1243123IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MDRDSNDGRI PLSSLSCYKE MCRLADKDCH FSTIRRPPLL FRDVYEMVND PSTDSVVSWG  60
DSGKSFIVWK ESEFLGDVLP RCLSYDYKDM TSFTTKFHAL GYNKVEESVH WEYTANYLVR  120
GQPPSPKDPS PCTSADLLTM VTPEYAKIYK CWLIDCLESI RSNRQKACDA NFGVVILEIL  180
KGKEALDFDK PAEEEDPGGM G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018484778.11e-108PREDICTED: heat stress transcription factor A-4a-like
TrEMBLA0A0D3C5F12e-72A0A0D3C5F1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6CSF32e-72A0A3P6CSF3_BRACM; Uncharacterized protein
STRINGBo4g190160.14e-73(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132311127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.18e-16heat shock transcription factor A1D