PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC1838_p3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | DBB | ||||||||
Protein Properties | Length: 232aa MW: 25749.7 Da PI: 4.976 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.8 | 3.3e-06 | 15 | 47 | 2 | 34 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeH 34 + r+C+ +e+ + +C+ ++ lC C + H RrC1838_p3 15 QHRICDYCESSVALVYCKADSAKLCLACDNKVH 47 6789*************************9999 PP | |||||||
2 | zf-B_box | 21.1 | 6.5e-07 | 60 | 102 | 4 | 42 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Htvvpl 42 C+ +++ + + fC + ++ lC++C ++H + H+++pl RrC1838_p3 60 LLCDSCHDSPSSVFCDTESSVLCQNCDWQHHTSssslHSRRPL 102 57***************************88668899998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.011 | 14 | 61 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 7.1E-12 | 14 | 61 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.25E-5 | 17 | 61 | No hit | No description |
PROSITE profile | PS50119 | 10.239 | 57 | 102 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.90E-4 | 61 | 88 | No hit | No description |
SMART | SM00336 | 0.42 | 62 | 102 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MERGGEEEEG SHQQQHRICD YCESSVALVY CKADSAKLCL ACDNKVHVTN QLFSKHFRSL 60 LCDSCHDSPS SVFCDTESSV LCQNCDWQHH TSSSSLHSRR PLEGFSGCPS VTELLALVGL 120 DDLTDKALFL PHPGGSDQTP PQIVSLNDLV ASDGSSHNYR AMDVPPLPKN RHATCGRHKE 180 EMIRQLRELS RSEPSCMKYE TLDAELDTSG FLFLEPGNDL FSSTFESQIL IV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189634 | 1e-179 | AC189634.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS004I08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009142494.1 | 1e-153 | PREDICTED: zinc finger protein CONSTANS-LIKE 13 | ||||
Swissprot | O82256 | 1e-106 | COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13 | ||||
TrEMBL | A0A397Z5S4 | 1e-154 | A0A397Z5S4_BRACM; Uncharacterized protein | ||||
STRING | Bra004423.1-P | 1e-153 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8148 | 27 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47890.2 | 1e-100 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
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