PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC18251_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 105aa    MW: 12230.9 Da    PI: 10.6865
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC18251_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.6e-183382255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  y+G+r +k +g+WvAeIr+p   +kr r +lg++ ta+ Aa+a++ a  +l+g
  RrC18251_p1 33 PYRGIRMRK-WGKWVAEIREP---NKRSRLWLGSYTTADAAARAYDTAVFYLRG 82
                 69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.2E-363396IPR001471AP2/ERF domain
PROSITE profilePS5103222.8793390IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-213391IPR016177DNA-binding domain
PfamPF008472.2E-113482IPR001471AP2/ERF domain
CDDcd000181.63E-253492No hitNo description
Gene3DG3DSA:3.30.730.103.0E-313491IPR001471AP2/ERF domain
PRINTSPR003671.5E-93445IPR001471AP2/ERF domain
PRINTSPR003671.5E-95672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MEGELQQEPC RRKRRQPPQE KEDTHVATRP LKPYRGIRMR KWGKWVAEIR EPNKRSRLWL  60
GSYTTADAAA RAYDTAVFYL RGPSARLNFP DLLFQEEGQR SAAAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-163290463ATERF1
3gcc_A1e-163290463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00188DAPTransfer from AT1G46768Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018449862.19e-73PREDICTED: ethylene-responsive transcription factor RAP2-1 isoform X1
SwissprotQ8LC304e-50RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLM4DC442e-63M4DC44_BRARP; Uncharacterized protein
STRINGBra014056.1-P3e-64(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.19e-43related to AP2 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]