PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1823_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 228aa    MW: 25416.7 Da    PI: 9.5187
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1823_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.12.3e-1486130347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + ++ G+g+Wk I++ + k Rt  q+ s+ qky
       RrC1823_p3  86 PWTEEEHKLFLLGLEKVGKGNWKGISKNFVKSRTSTQVASHAQKY 130
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.03679135IPR017930Myb domain
SuperFamilySSF466892.55E-1781136IPR009057Homeodomain-like
TIGRFAMsTIGR015574.3E-1782133IPR006447Myb domain, plants
SMARTSM007172.6E-1083133IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-1185130IPR009057Homeodomain-like
PfamPF002491.2E-1186130IPR001005SANT/Myb domain
CDDcd001677.44E-1086131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MADGTNTFAC GVSKEIMLFG VRVVLDPMRK SVSLNNLSEY ENTEVTLKIV GEDGDGQDKN  60
KTSSCYASAD DAVPVSFNRE RKRGVPWTEE EHKLFLLGLE KVGKGNWKGI SKNFVKSRTS  120
TQVASHAQKY FLRRSNLNRR RRRRSSLFDM TTATVMPMEE VQDNTSQPSS LVPDVNSFTS  180
HPLMQIFPEF TFEARPTPIS LNLSLASSTL NEPSSTSRHS AFNTIGVA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138143RRRRRR
Functional Description ? help Back to Top
Source Description
UniProtBinds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00236DAPTransfer from AT1G74840Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018472432.11e-144PREDICTED: transcription factor MYB1R1-like isoform X1
SwissprotQ2V9B02e-51MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLA0A0D3AQK21e-115A0A0D3AQK2_BRAOL; Uncharacterized protein
STRINGBo2g082370.11e-116(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24612669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74840.28e-88MYB_related family protein
Publications ? help Back to Top
  1. Shin D, et al.
    Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance.
    Plant Physiol., 2011. 155(1): p. 421-32
    [PMID:21030505]