PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC18229_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | LBD | ||||||||
Protein Properties | Length: 263aa MW: 27868.1 Da PI: 8.4194 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 94.7 | 1e-29 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C++dC ++p++ p++q++++ +++k++G++ +++l++a p++ r+ +++sl+ eA+ r+ +P+yG+vg+++++++ql+q+++e RrC18229_p1 4 SCNGCRVLRKGCSDDCSIRPCLawiksPEAQANATVFLAKFYGRAGLMNLINAGPDHLRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQAAVE 101 6************************************************************************************************9 PP DUF260 94 lallke 99 +++ +e RrC18229_p1 102 AVMKGE 107 988776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038155 | 8.2E-95 | 1 | 263 | IPR017414 | LOB domain-containing protein 10/36/41 |
PROSITE profile | PS50891 | 16.275 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.6E-24 | 4 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSDDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL MNLINAGPDH 60 LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQAAV EAVMKGEPIT EMATDAATNG 120 QGPPLKMYDI RHISKDESSA AAAAAAAGLT DLKKPKARRA KRLAAVAKPA ESEGKSGGGE 180 ASHVSSLSHQ SEIVAAQEGD SNISEVMAFS PPAVQSSGEI KLDLTLGLEP VVHACNVVPL 240 KKRKIGAFAM CQEESPCKTE LKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY208877 | 0.0 | AY208877.1 Brassica napus seed specific protein Bn15D17A mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018492744.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: LOB domain-containing protein 41 | ||||
Swissprot | Q9M886 | 1e-154 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A3P6AWN5 | 1e-174 | A0A3P6AWN5_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g055690.1 | 1e-173 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7721 | 27 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 1e-137 | LOB domain-containing protein 41 |