PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC180_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ZF-HD
Protein Properties Length: 304aa    MW: 34378.5 Da    PI: 7.5822
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC180_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer97.69.8e-3187143360
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                   ++YkeClkNhAa++Gg+a+DGCgEfmps ge g+++al+C+ C+CHRnFHR+eve e
    RrC180_p3  87 MIKYKECLKNHAAAMGGNATDGCGEFMPS-GEVGSIEALTCSVCNCHRNFHRKEVEGE 143
                  689*************************9.888*********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.5E-2788140IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-2888150IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.5E-3089140IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.39990139IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.94E-18206272IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-29208273IPR009057Homeodomain-like
TIGRFAMsTIGR015651.1E-27214270IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MNIASQEDHD MPIPLNTTYV GGGGHGHMIH HPHDHHAADS APPTHNNITT TQPPQRPLHA  60
NGHGNNNDDD HQDPHHLGYN AIIKKPMIKY KECLKNHAAA MGGNATDGCG EFMPSGEVGS  120
IEALTCSVCN CHRNFHRKEV EGETPATAIS SYHQPPPPRK LMVNHHNIRS AMPHQMIMPI  180
GVSNYRYMQN LESDDFMEQE GVTTASRPPP YNQKKRFRTK FTPEQKEKML SFAERVGWKI  240
QRQEDSVVQR FCEEIGVKRR VLKVWMHNNK LHFSNKNTSN TINLDNDKIN NVNNVDLSGN  300
NDMI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A2e-242142701773ZF-HD homeobox family protein
1wh7_A2e-242152701873ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934560.0AB493456.1 Arabidopsis thaliana At1g14440 mRNA for hypothetical protein, partial cds, clone: RAAt1g14440.
GenBankAY0742660.0AY074266.1 Arabidopsis thaliana unknown protein (At1g14440) mRNA, complete cds.
GenBankAY0967380.0AY096738.1 Arabidopsis thaliana unknown protein (At1g14440) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF14L170.0AC012188.2 Sequence of BAC F14L17 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018435472.10.0PREDICTED: zinc-finger homeodomain protein 4 isoform X1
RefseqXP_018435478.10.0PREDICTED: zinc-finger homeodomain protein 4 isoform X2
RefseqXP_018435483.10.0PREDICTED: zinc-finger homeodomain protein 4 isoform X1
RefseqXP_018435487.10.0PREDICTED: zinc-finger homeodomain protein 4 isoform X2
SwissprotQ9M9S01e-169ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A3N6PNJ20.0A0A3N6PNJ2_BRACR; Uncharacterized protein
TrEMBLA0A3P6F3B00.0A0A3P6F3B0_BRAOL; Uncharacterized protein
STRINGBra026219.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33392665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.21e-150homeobox protein 31