PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1805_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 99aa    MW: 11049.6 Da    PI: 10.1719
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1805_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.7e-074385343
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43
                     +W+  Ed  l++a k ++++   +W+++a+ ++ g++   c  r
       RrC1805_p4 43 SWSNGEDIALLNALKAFPKEaamRWEKVAAAVP-GKSKAACMKR 85
                     7********************************.*******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.63E-104089IPR009057Homeodomain-like
SMARTSM007171.5E-44092IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.9E-64290IPR009057Homeodomain-like
PROSITE profilePS500906.5394390IPR017877Myb-like domain
PfamPF002492.3E-64385IPR001005SANT/Myb domain
CDDcd001671.11E-44890No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MEFYDEDKPR IVFQSRPSSS RKTTEEDDDP KTPNKISISI SVSWSNGEDI ALLNALKAFP  60
KEAAMRWEKV AAAVPGKSKA ACMKRVTELK KGFRSSKAN
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535422e-53AK353542.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-P19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024011081.12e-30transcription factor MAMYB
RefseqXP_024011082.12e-30transcription factor MAMYB
SwissprotQ9ASQ28e-31MAMYB_ARATH; Transcription factor MAMYB
TrEMBLE4MYE55e-29E4MYE5_EUTHA; mRNA, clone: RTFL01-50-P19
STRINGBostr.8819s0063.1.p3e-29(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM126921011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.13e-33MYB_related family protein