PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC17973_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | Dof | ||||||||
Protein Properties | Length: 196aa MW: 21875.2 Da PI: 9.1859 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.2 | 7.3e-38 | 17 | 75 | 2 | 60 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +++ ++cprC+s+ntkfCyynnysl+qPry+Ck+CrryWt+GG+lrnvPvGgg+rknkk RrC17973_p1 17 PQEPRNCPRCNSSNTKFCYYNNYSLAQPRYLCKSCRRYWTEGGSLRNVPVGGGSRKNKK 75 67899****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-28 | 16 | 73 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.0E-33 | 19 | 75 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.444 | 21 | 75 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 23 | 59 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MIMDAEKKMI TTMTSRPQEP RNCPRCNSSN TKFCYYNNYS LAQPRYLCKS CRRYWTEGGS 60 LRNVPVGGGS RKNKKLPLLQ PNSSSSSPTK NLPDLNPPFV FTSTSNPSKS THQNNDLSLS 120 FSSPTMRDKE AQGHYDRNKQ EISGGGSKLM FPYGNGDEHH HDHERHDDGN KTRESGSSNE 180 LWSGIILGGD SGGPTW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493666 | 1e-105 | AB493666.1 Arabidopsis thaliana At4g00940 mRNA for hypothetical protein, partial cds, clone: RAAt4g00940. | |||
GenBank | AL161491 | 1e-105 | AL161491.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 3. | |||
GenBank | CP002687 | 1e-105 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. | |||
GenBank | TM018A10 | 1e-105 | AF013294.1 Arabidopsis thaliana BAC TM018A10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018463356.1 | 1e-123 | PREDICTED: dof zinc finger protein DOF4.1 | ||||
Refseq | XP_018463357.1 | 1e-123 | PREDICTED: dof zinc finger protein DOF4.1 | ||||
Refseq | XP_018463358.1 | 1e-123 | PREDICTED: dof zinc finger protein DOF4.1 | ||||
Swissprot | Q9M161 | 7e-94 | DOF41_ARATH; Dof zinc finger protein DOF4.1 | ||||
TrEMBL | R0HC39 | 1e-101 | R0HC39_9BRAS; Uncharacterized protein | ||||
STRING | XP_006288360.1 | 1e-102 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14695 | 17 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00940.1 | 2e-78 | Dof family protein |