PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1777_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 208aa    MW: 23762.8 Da    PI: 4.3404
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1777_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.4e-19555155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                ++y+GVr +k +g+WvAeIr p++   r r++lg+f++ae+Aa+a +aa  +l+g
  RrC1777_p1  5 PKYTGVRKRK-WGKWVAEIRLPNS---RERIWLGSFDSAEKAARAFDAALYCLRG 55
                79*****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-11555IPR001471AP2/ERF domain
CDDcd000181.12E-27565No hitNo description
SuperFamilySSF541719.81E-21664IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.6E-29664IPR001471AP2/ERF domain
PROSITE profilePS5103221.707663IPR001471AP2/ERF domain
SMARTSM003801.2E-29669IPR001471AP2/ERF domain
PRINTSPR003672.5E-9718IPR001471AP2/ERF domain
PRINTSPR003672.5E-92945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MDASPKYTGV RKRKWGKWVA EIRLPNSRER IWLGSFDSAE KAARAFDAAL YCLRGSGARF  60
NFPDNPPVIP GGRSMTPQEI QVAANRFAKE ELLAPQQQRP TSQRGDKSSE EVTGISAREE  120
ISGGPTLGEV GEYNNYNNEN NNSNGTDTST YWPFLWEENF GMSEEFDTFY MEDSSQQQEH  180
ELSSDFYYDG AYVVEDDFSH YNINLWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-166631472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018474848.11e-130PREDICTED: ethylene-responsive transcription factor ERF016-like
SwissprotQ9C5911e-95ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLA0A397ZTG31e-109A0A397ZTG3_BRACM; Uncharacterized protein
TrEMBLM4CQV81e-109M4CQV8_BRARP; Uncharacterized protein
STRINGBra006599.1-P1e-110(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141671424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.11e-93ERF family protein