PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC17670_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | WRKY | ||||||||
Protein Properties | Length: 296aa MW: 32909.6 Da PI: 8.4232 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95 | 5.2e-30 | 131 | 189 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++prsYYrC+s+ gC ++k+ver+ ++p+ ++itY++eH he RrC17670_p1 131 SDAWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVERNPQNPEKFTITYTNEHAHE 189 7**************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.4E-30 | 116 | 191 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-25 | 125 | 191 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.156 | 125 | 191 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.3E-35 | 130 | 190 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.4E-25 | 132 | 188 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MDEGDLEAVV RGYSSSSDVF SGKSSGEFSP SFCPPVQTAS FYGQEMETTG LDELGVLYKP 60 FYPSSTQTLT KSVSVPEDSK CFQDDKKQRT YGCLLANGSK FNRIRTPGSW KSKKNQQKRV 120 VEQVKEENLL SDAWAWRKYG QKPIKGSPYP RSYYRCSSSK GCLARKQVER NPQNPEKFTI 180 TYTNEHAHEI PTRRNSLAGT TRAKSSKPKP SITKKSGKQV VSSPTSNHVI TSGDESSVVV 240 QAMEVAEMSA YLTTGEIEGT SNNLPTDLPS DTGHIPSDFD EILNSQDFIN GYLWNY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-19 | 121 | 191 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 4e-19 | 121 | 191 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 22, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced 30 minutes after flagellin treatment. {ECO:0000269|PubMed:11875555}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018468799.1 | 0.0 | PREDICTED: probable WRKY transcription factor 29 | ||||
Swissprot | Q9SUS1 | 1e-160 | WRK29_ARATH; Probable WRKY transcription factor 29 | ||||
TrEMBL | A0A078HZR5 | 0.0 | A0A078HZR5_BRANA; BnaA01g13230D protein | ||||
TrEMBL | A0A398AT69 | 0.0 | A0A398AT69_BRACM; Uncharacterized protein | ||||
STRING | Bra013708.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6090 | 25 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23550.1 | 1e-129 | WRKY family protein |