PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RrC17640_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | CO-like | ||||||||
Protein Properties | Length: 211aa MW: 24229.7 Da PI: 10.5499 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 25.9 | 2.1e-08 | 18 | 63 | 3 | 41 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllC.edClleeHkg......Htvvp 41 r+C+ +e+ ++ +fC+ + lC C +++H+ H++v RrC17640_p2 18 VRVCEACERAPAAFFCKADAASLCiGACDTQIHSAnkfarkHQRVA 63 689*********************779******6688888998876 PP | |||||||
2 | CCT | 67.8 | 2.9e-23 | 166 | 208 | 1 | 43 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Rea+++RY+eK+ktRkFeK++rY sRKa+Ae+RpR+KGrFvk+ RrC17640_p2 166 REARVMRYREKKKTRKFEKTVRYTSRKAYAETRPRIKGRFVKR 208 9****************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.096 | 16 | 64 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.5E-13 | 16 | 64 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 9.9E-7 | 18 | 64 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.78E-6 | 19 | 64 | No hit | No description |
Pfam | PF06203 | 4.8E-18 | 166 | 208 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.509 | 166 | 208 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 211 aa Download sequence Send to blast |
CDAQVHAANL FAFRHERVRV CEACERAPAA FFCKADAASL CIGACDTQIH SANKFARKHQ 60 RVAILPISVK SYSSMATNHS NYNVPQRRYS RDGVVPLQVE ESKGHMHHEQ HNCQFVFTNV 120 SSGCHMVSLM PESTTSDTKL SNPRSPKPTT EQLPEHPRQI LSLVDREARV MRYREKKKTR 180 KFEKTVRYTS RKAYAETRPR IKGRFVKRLR S |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. Does not affect flowering time. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC240087 | 9e-95 | AC240087.1 Brassica oleracea clone BOT01-44D22, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013686315.1 | 1e-103 | zinc finger protein CONSTANS-LIKE 1 | ||||
Swissprot | Q96502 | 7e-71 | COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2 | ||||
TrEMBL | A0A3P6AML8 | 1e-102 | A0A3P6AML8_BRACM; Uncharacterized protein | ||||
STRING | Bra023541.1-P | 1e-102 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2128 | 26 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02380.1 | 4e-52 | CONSTANS-like 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|