PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC17636_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 175aa MW: 20243.2 Da PI: 10.0136 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 61.9 | 2e-19 | 10 | 95 | 51 | 128 |
NAM 51 vkaeekewyfFskrdkkyatgkrknr.atksgy......WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 v+++ ++++fF k+ ++y++g+rk+r +t sg W++tgk+k+v+ +g ++g+kk +v+y ++ +k+e+++Wvmh+y+l RrC17636_p2 10 VNKDGTSTFFFNKTVHAYPKGERKRRsITPSGLkdaslrWRKTGKTKPVMI-NGVQKGCKKFMVLYksAKKGSKPENSKWVMHQYHL 95 45567789******************6666554444445************.999***********44246667779********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 20.713 | 1 | 113 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 9.68E-20 | 12 | 113 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-6 | 17 | 95 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MSLSKTFDSV NKDGTSTFFF NKTVHAYPKG ERKRRSITPS GLKDASLRWR KTGKTKPVMI 60 NGVQKGCKKF MVLYKSAKKG SKPENSKWVM HQYHLGREEA ETGEYVVSKI MYQQQQQGLE 120 NTQEASSSLV EKNPNYWDFD MSYGNCMKLD KQVILLRIFL QFASEDSIMN CLEWI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022565770.1 | 2e-93 | SUPPRESSOR OF GAMMA RESPONSE 1-like | ||||
Swissprot | Q6NQK2 | 6e-32 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A397ZVL2 | 2e-90 | A0A397ZVL2_BRACM; Uncharacterized protein | ||||
STRING | Bra006257.1-P | 4e-62 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14490.1 | 1e-55 | NAC domain containing protein 85 |