PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC17622_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB | ||||||||
Protein Properties | Length: 222aa MW: 25312.8 Da PI: 9.2135 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.4 | 3.2e-08 | 14 | 45 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 rg WT+eEd lv +++++G ++W + +++ g RrC17622_p1 14 RGEWTAEEDRMLVAYINKYGVRDWGALPKRAG 45 89***********************9999887 PP | |||||||
2 | Myb_DNA-binding | 54.3 | 3.1e-17 | 45 | 88 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g++T++E+e +++ + +lG++ W++Ia+ m+ +Rt++++k++w++ RrC17622_p1 45 GKFTAQEEEDIIKFHSLLGNR-WAAIAKQMP-NRTDNDIKNHWNSC 88 79*******************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.94E-19 | 11 | 85 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.6E-9 | 12 | 45 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.6E-17 | 13 | 91 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.53E-10 | 16 | 86 | No hit | No description |
PROSITE profile | PS51294 | 20.848 | 39 | 93 | IPR017930 | Myb domain |
Pfam | PF00249 | 8.1E-16 | 45 | 88 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.6E-20 | 46 | 90 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MGRTTWFDVD GIKRGEWTAE EDRMLVAYIN KYGVRDWGAL PKRAGKFTAQ EEEDIIKFHS 60 LLGNRWAAIA KQMPNRTDND IKNHWNSCLK KRLRRSGIDP MTHGPIKTTS STRSSPARRH 120 SSSTSSFSLS STGSVRLLNK LAAGISSRKF GLDRIKTVMI SSEPRQVDDE EKVMIGSKKE 180 EERVIGCFME IDKNLISTMS LDELPCDSSY YYCDDWLRGC FQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-17 | 14 | 93 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018468444.1 | 1e-148 | PREDICTED: transcription factor MYB34-like | ||||
TrEMBL | A0A078HV83 | 1e-133 | A0A078HV83_BRANA; BnaC02g22880D protein | ||||
TrEMBL | A0A0D3AQH4 | 1e-133 | A0A0D3AQH4_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g081100.1 | 1e-134 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74430.1 | 1e-82 | myb domain protein 95 |