PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC17622_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 222aa    MW: 25312.8 Da    PI: 9.2135
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC17622_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.2e-081445132
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                     rg WT+eEd  lv +++++G ++W + +++ g
      RrC17622_p1 14 RGEWTAEEDRMLVAYINKYGVRDWGALPKRAG 45
                     89***********************9999887 PP

2Myb_DNA-binding54.33.1e-174588247
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     g++T++E+e +++ + +lG++ W++Ia+ m+ +Rt++++k++w++ 
      RrC17622_p1 45 GKFTAQEEEDIIKFHSLLGNR-WAAIAKQMP-NRTDNDIKNHWNSC 88
                     79*******************.*********.***********975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.94E-191185IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-91245IPR009057Homeodomain-like
SMARTSM007178.6E-171391IPR001005SANT/Myb domain
CDDcd001671.53E-101686No hitNo description
PROSITE profilePS5129420.8483993IPR017930Myb domain
PfamPF002498.1E-164588IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-204690IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MGRTTWFDVD GIKRGEWTAE EDRMLVAYIN KYGVRDWGAL PKRAGKFTAQ EEEDIIKFHS  60
LLGNRWAAIA KQMPNRTDND IKNHWNSCLK KRLRRSGIDP MTHGPIKTTS STRSSPARRH  120
SSSTSSFSLS STGSVRLLNK LAAGISSRKF GLDRIKTVMI SSEPRQVDDE EKVMIGSKKE  180
EERVIGCFME IDKNLISTMS LDELPCDSSY YYCDDWLRGC FQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-1714937108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468444.11e-148PREDICTED: transcription factor MYB34-like
TrEMBLA0A078HV831e-133A0A078HV83_BRANA; BnaC02g22880D protein
TrEMBLA0A0D3AQH41e-133A0A0D3AQH4_BRAOL; Uncharacterized protein
STRINGBo2g081100.11e-134(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74430.11e-82myb domain protein 95