PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC17562_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 396aa    MW: 44089.3 Da    PI: 4.5361
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC17562_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.31.1e-4761341129
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  l+pGfrFhPtd elv +yLk+kv gkkl + ++i+e+diyk+eP+dLp k  +k+++ +w+fF++r+kky+tg r+nrat+ gyWk+tgk+++vl+ +
  RrC17562_p1   6 LAPGFRFHPTDVELVRYYLKRKVLGKKLLV-DAIAELDIYKFEPSDLPdKsYIKSGDLKWHFFCPREKKYSTGVRANRATACGYWKTTGKERDVLC-N 101
                  579************************999.89**************96347778888**************************************.9 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrle 129
                  ge+ g  ktLv++ g++p+ge+tdWvmheyrle
  RrC17562_p1 102 GEVAGKIKTLVYHFGKSPRGERTDWVMHEYRLE 134
                  99*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-563156IPR003441NAC domain
PROSITE profilePS5100552.0596156IPR003441NAC domain
PfamPF023651.3E-258133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MGKTQLAPGF RFHPTDVELV RYYLKRKVLG KKLLVDAIAE LDIYKFEPSD LPDKSYIKSG  60
DLKWHFFCPR EKKYSTGVRA NRATACGYWK TTGKERDVLC NGEVAGKIKT LVYHFGKSPR  120
GERTDWVMHE YRLEDKVLTQ KNVPQDTYVL CVLFKKDGPG PRNGAQYGAP YKDEDWSDEE  180
QHTDVPATNA PAILQGETSL AVAHVPNKDS FVGMIAESCV SDFLQATTTA SDLPQLNDAA  240
NTPLSAAPLL DSNSIASLAP PTLEAPNNCD DIYSMLHLFV DEDEYFRFSE FNNTEMRHDP  300
NVSAPICLGE GDIFSELPDF SNMQHISMPR TPSYDLIENS ELYLDLQDLT APLAPPQIGN  360
ASDSYLSHQG QFDFSTAAND EDPYGFSASM GQGPDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-43615615168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667581e-175KC966758.1 Brassica napus NAC transcription factor 82 (NAC82.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018470726.10.0PREDICTED: NAC domain-containing protein 82-like
SwissprotQ9FY820.0NAC82_ARATH; NAC domain-containing protein 82
TrEMBLA0A398A8580.0A0A398A858_BRACM; Uncharacterized protein
TrEMBLA0A3P6ABT90.0A0A3P6ABT9_BRACM; Uncharacterized protein
TrEMBLM4EIM50.0M4EIM5_BRARP; Uncharacterized protein
STRINGBra028640.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36922562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.41e-171NAC domain containing protein 82
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]