PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC17549_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ERF | ||||||||
Protein Properties | Length: 90aa MW: 9950.26 Da PI: 10.224 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.4 | 1.8e-18 | 14 | 64 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++++ +Wv+eIr+p r +r++lg+f t+e+Aa a++ a+++l+g RrC17549_p1 14 LYRGVRQRRNSDKWVSEIREP-----RkpTRIWLGTFSTPEMAAIAYDVAALALKG 64 69******************9.....448************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.1E-12 | 13 | 64 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.90E-28 | 13 | 74 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.1E-28 | 14 | 73 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.2E-20 | 14 | 74 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.956 | 14 | 72 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-31 | 14 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.4E-6 | 15 | 26 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.4E-6 | 38 | 54 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 90 aa Download sequence Send to blast |
MPGTSKENGG RQPLYRGVRQ RRNSDKWVSE IREPRKPTRI WLGTFSTPEM AAIAYDVAAL 60 ALKGTETEFN FPNSVSSLPV PASMSPGDIQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 10 | 21 | RQPLYRGVRQRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018479913.1 | 2e-60 | PREDICTED: ethylene-responsive transcription factor ERF024-like | ||||
Swissprot | Q9SJR0 | 1e-49 | ERF24_ARATH; Ethylene-responsive transcription factor ERF024 | ||||
TrEMBL | A0A078JYM0 | 4e-55 | A0A078JYM0_BRANA; BnaAnng34830D protein | ||||
TrEMBL | A0A397ZWF9 | 4e-55 | A0A397ZWF9_BRACM; Uncharacterized protein | ||||
TrEMBL | M4DL54 | 4e-55 | M4DL54_BRARP; Uncharacterized protein | ||||
STRING | Bra017235.1-P | 7e-56 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6424 | 25 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36450.1 | 1e-42 | ERF family protein |