PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1752_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 289aa    MW: 32533.5 Da    PI: 8.0951
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1752_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016426123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ykC+ C ksF +   L  H+r+H
  RrC1752_p2  4 YKCKFCFKSFVNGRALGGHMRSH 26
                9*********************9 PP
2zf-C2H216.13.2e-05181203123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+C+ Cgk+F++   L  H  +H
  RrC1752_p2 181 YTCETCGKVFKSYQALGGHRASH 203
                 9************9999998887 PP
3zf-C2H211.90.00067227249123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp+C ++F++   L  H r+H
  RrC1752_p2 227 HECPICLRVFTSGQALGGHKRSH 249
                 79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.7E-10326No hitNo description
SMARTSM003550.016426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.138426IPR007087Zinc finger, C2H2
PfamPF139124.1E-6427IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-4172206IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.7E-10176203No hitNo description
SMARTSM003550.011181203IPR015880Zinc finger, C2H2-like
PfamPF139124.3E-11181205IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.24181208IPR007087Zinc finger, C2H2
PROSITE patternPS000280183203IPR007087Zinc finger, C2H2
SMARTSM003550.14227249IPR015880Zinc finger, C2H2-like
PfamPF139123.9E-12227249IPR007087Zinc finger, C2H2
PROSITE profilePS501579.203227249IPR007087Zinc finger, C2H2
PROSITE patternPS000280229249IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MESYKCKFCF KSFVNGRALG GHMRSHMPTL HKFSLQEEEE RPSQLSIESK SNVSSSSSEE  60
GGEISGLREE KHRTMDDGSE TESSRNIVNL TRKRSKRTRK LDSFSSKKMM KTSQLGYEPE  120
AEAPHSSASD TTTEEDLAFC LMMLSRDKWK KNKVSSHEEV VEEIDVEASE GYKIHTTKGR  180
YTCETCGKVF KSYQALGGHR ASHKKNRVSN KTEYDAVVVA APEKRIHECP ICLRVFTSGQ  240
ALGGHKRSHG LGNLSVNHQV DRTESVKQRI IDLNLPAPTE EDEVSVVFQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893190.0AC189319.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036H01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489522.10.0PREDICTED: zinc finger protein ZAT9
SwissprotQ9M2021e-134ZAT9_ARATH; Zinc finger protein ZAT9
TrEMBLA0A397Y4B01e-162A0A397Y4B0_BRACM; Uncharacterized protein
TrEMBLM4CTK11e-163M4CTK1_BRARP; Uncharacterized protein
STRINGBra007545.1-P1e-163(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-120C2H2-like zinc finger protein