PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1749_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 336aa    MW: 38271.2 Da    PI: 6.5105
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1749_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.92.8e-55211481129
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 +ppGfrFhPtdeel+++yL++kv ++++++  ++ e+d++k+ePwdL+k++k ++ke+yfF++rd+ky+tg r+nrat+sgyWkatgkdke+++ kg l
  RrC1749_p1  21 MPPGFRFHPTDEELITCYLREKVLDSRFTA-VAMGEADLNKCEPWDLQKRAKMGDKELYFFCQRDRKYPTGLRTNRATESGYWKATGKDKEIFKGKGCL 118
                 79*************************999.67***************99999*****************************************9**** PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129
                 vg+kktLvfy+grap+gekt+Wvmheyrle
  RrC1749_p1 119 VGMKKTLVFYRGRAPRGEKTNWVMHEYRLE 148
                 ****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-6218173IPR003441NAC domain
PROSITE profilePS5100557.31621172IPR003441NAC domain
PfamPF023651.9E-2922147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MSVVVEEGVV LNHGGEELVD MPPGFRFHPT DEELITCYLR EKVLDSRFTA VAMGEADLNK  60
CEPWDLQKRA KMGDKELYFF CQRDRKYPTG LRTNRATESG YWKATGKDKE IFKGKGCLVG  120
MKKTLVFYRG RAPRGEKTNW VMHEYRLEGK YSYHNLPKSA RDEWVVCRVF HKNNPATTTQ  180
QMTRIPLEDL TRMDSLDNID HLLDFSSLPP LMDPSFTGQP EQHNFKSTSP PTYDIVSSPI  240
QPRHFNSSYQ SIFDHQGFGS GSGSSYNNNN KEMIKMEHSL VSVSQETCLS SDVNAATATE  300
VSSVPAMKQE MSMMGMMNGS KSYDDLCDLR GILWDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-4981742170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6413570.0KP641357.1 Brassica napus NAC transcription factor 87.1 (NAC87.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018442763.10.0PREDICTED: NAC domain-containing protein 92-like
SwissprotQ9FK440.0NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A397XLF40.0A0A397XLF4_BRACM; Uncharacterized protein
TrEMBLM4CD670.0M4CD67_BRARP; Uncharacterized protein
STRINGBra002148.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22692775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.10.0Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]