PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC17489_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 310aa    MW: 33871.5 Da    PI: 5.4961
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC17489_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.44.5e-201358147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEdell  +v+++G+++W++I++ ++ gR++k+c++rw + 
      RrC17489_p1 13 KGPWSPEEDELLQSLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 58
                     79******************************.***********985 PP
2Myb_DNA-binding53.46.1e-1767109347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++++eEde +v+a++++G++ W+tI+r +  gRt++ +k++w++ 
      RrC17489_p1  67 SFSPEEDETIVRAHARFGNK-WATISRLLS-GRTDNAIKNHWNST 109
                      69******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.151863IPR017930Myb domain
SuperFamilySSF466892.28E-3110106IPR009057Homeodomain-like
SMARTSM007171.4E-171261IPR001005SANT/Myb domain
PfamPF002498.5E-201358IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-261466IPR009057Homeodomain-like
CDDcd001676.17E-171557No hitNo description
SMARTSM007177.7E-1464112IPR001005SANT/Myb domain
PROSITE profilePS5129420.03265114IPR017930Myb domain
PfamPF002495.3E-1467109IPR001005SANT/Myb domain
CDDcd001673.84E-1167110No hitNo description
Gene3DG3DSA:1.10.10.603.5E-2267113IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MSSSVRKNME RIKGPWSPEE DELLQSLVQK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS  60
PEVEHRSFSP EEDETIVRAH ARFGNKWATI SRLLSGRTDN AIKNHWNSTL KRKCNAVTSD  120
GQSGNGGYDG NIGEEQPLKR TASGGGGGVS TELCMSPGSP SGSDVSEQSG GGQHVSRSAP  180
VNEMTASSSG EDPPTYLSLS LPWNNETETV RVNESTQLNE DTVIDNGYTA ELFPVRKEEV  240
EEEKEMSGFG GEFMTVVQEM IRTEVRSYMA DLQRGNVSGG GGSCVPQGVM NRRVGFREFV  300
VNQIGIGKIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-41101141105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018449489.10.0PREDICTED: transcription factor MYB44-like
SwissprotO231601e-171MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A0D3BJV10.0A0A0D3BJV1_BRAOL; Uncharacterized protein
STRINGBo3g153550.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67728135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-172myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]