PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1739_p2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 302aa    MW: 32017.4 Da    PI: 6.5189
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1739_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.34.2e-091257345
                     SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwq 45
                     +W+ e+d  + +a + + ++     W++Ia+ ++ g++ +q+k+++ 
       RrC1739_p2 12 AWSREDDIAFERALANYYTDeseeKWEKIAADVP-GKSVEQIKEHYE 57
                     7*********************************.**********95 PP

2Myb_DNA-binding40.56.3e-13121165347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W+++E+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
       RrC1739_p2 121 AWSEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 165
                      6*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.173864IPR017884SANT domain
SMARTSM007173.9E-8962IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-51157IPR009057Homeodomain-like
PfamPF002491.6E-71257IPR001005SANT/Myb domain
CDDcd001671.16E-81260No hitNo description
SuperFamilySSF466894.67E-101367IPR009057Homeodomain-like
PROSITE profilePS5129417.139113170IPR017930Myb domain
SuperFamilySSF466895.1E-16116171IPR009057Homeodomain-like
SMARTSM007176.6E-10118168IPR001005SANT/Myb domain
TIGRFAMsTIGR015579.4E-17118168IPR006447Myb domain, plants
CDDcd001671.88E-9121166No hitNo description
PfamPF002496.2E-11121165IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-10121164IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MTVEEVSGDG SAWSREDDIA FERALANYYT DESEEKWEKI AADVPGKSVE QIKEHYELLV  60
EDVSRIESGC VPLPSYRFSP SLEDAGGGDD GGGGSSKKGG NNSHDQGSKA KADQERRKGI  120
AWSEDEHRLF LLGLDKYGKG DWRSISRNFV VTRTPTQVAS HAQKYFIRLN SMNKDRRRSS  180
IHDITSVGDA DVSTPQGPIT GQNNNTTTTG SAAVAGGGNK SAKQAASQPP PGPPMYGGTP  240
TIGQAVGGPL VSAVGTPVNL PAPPHMAYGV HAASVPGSVV PGAPMNMGQM PYTMPRTPTA  300
HR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-16877674RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895541e-134AC189554.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006C14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018446593.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ9FNN61e-166SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A1J3GAI10.0A0A1J3GAI1_NOCCA; Transcription factor DIVARICATA
STRINGXP_006399351.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35562861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-143MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]