PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC17293_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 284aa MW: 32086.6 Da PI: 4.4679 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.3 | 3.6e-10 | 135 | 182 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rEr RR+++N++f L ++l + + +K +K +iL A++ +++L RrC17293_p1 135 TKACRERLRREKLNEKFMDLSSVLEPG---RTPKTDKPAILDDAIRVLNQL 182 5678**********************8...8*****************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.557 | 131 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.22E-8 | 135 | 185 | No hit | No description |
Pfam | PF00010 | 1.6E-7 | 135 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.2E-10 | 137 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.49E-12 | 137 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-10 | 139 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MYPSLDDDDF VSDFFCFDQS NGAELDDYTQ FGVDLQPDQA DTFPDFGSYG VNLQNDPEQV 60 FSIGDLTSYN GVLAQEPGQF RNFGGPNDCG TVREDVVVVN SGSSGGPVKQ EQEHVDEECS 120 RKRGRTGSCV RPGGTKACRE RLRREKLNEK FMDLSSVLEP GRTPKTDKPA ILDDAIRVLN 180 QLRDEAHEIE ETNQKLLEEI KSLKAEKNEL REEKQALKAE KEKTEQQLKS MMVPSTGFMP 240 QIPTPFNQNK MAVYPSYGYM PMWHYLPQSV RDTSRDQELR PPAA |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00102 | PBM | Transfer from AT4G14410 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353296 | 0.0 | AK353296.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-40-C06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009124106.1 | 0.0 | PREDICTED: transcription factor bHLH104 isoform X2 | ||||
Refseq | XP_013637415.1 | 0.0 | PREDICTED: transcription factor bHLH104 isoform X2 | ||||
Refseq | XP_013678511.1 | 0.0 | transcription factor bHLH104-like isoform X2 | ||||
Refseq | XP_013686728.1 | 0.0 | transcription factor bHLH104-like isoform X2 | ||||
Swissprot | Q8L467 | 1e-166 | BH104_ARATH; Transcription factor bHLH104 | ||||
TrEMBL | A0A078FEH2 | 0.0 | A0A078FEH2_BRANA; BnaC04g28710D protein | ||||
STRING | Bo4g126940.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4026 | 26 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14410.1 | 1e-121 | bHLH family protein |