PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC17125_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WOX
Protein Properties Length: 233aa    MW: 27036.2 Da    PI: 10.0504
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC17125_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.7e-19666257
                 T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 ++R+++t+eql +Lee++ +  r+p+a + ++++++l    +++ ++V++WFqN++a++++
  RrC17125_p1  6 STRWCPTPEQLMILEEMYGSgIRTPNAVQVQQITAHLafygRIEGKNVFYWFQNHKARDRQ 66
                 58*****************99*************************************996 PP
2Wus_type_Homeobox116.81e-37567264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       a+tRW+PtpeQ++iLee+y sG+rtPn+ ++q+ita+L+ yG+ie+kNVfyWFQN+kaR+rqk
        RrC17125_p1  5 ASTRWCPTPEQLMILEEMYGSGIRTPNAVQVQQITAHLAFYGRIEGKNVFYWFQNHKARDRQK 67
                       589***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.0039471IPR001356Homeobox domain
PfamPF000461.9E-16766IPR001356Homeobox domain
SuperFamilySSF466892.65E-10767IPR009057Homeodomain-like
CDDcd000860.00176765No hitNo description
Gene3DG3DSA:1.10.10.601.6E-6866IPR009057Homeodomain-like
PROSITE profilePS500719.5231267IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSPVASTRWC PTPEQLMILE EMYGSGIRTP NAVQVQQITA HLAFYGRIEG KNVFYWFQNH  60
KARDRQKLRK KLAKKLHQQQ NHLQLQLQQI KPRPISMMSP PLNNIIEYQN PCHHHHRPYD  120
HMSFACWSQP SPICLSHEGT GVEIQRKVVN EYYRNKSGPG DMLMPKRIKG QNSSYGQDWM  180
MMDMGTRPSY HSSSSSSHIP CYNMMMNSPK IPLKTLELFP ISPINSKQDS TKL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required to initiate organ founder cells in a lateral domain of shoot meristems. Involved in the lateral sepal axis-dependent development of flowers, probably by regulating the proliferation of L1 cells at the lateral region of flower primordia. Required for the formation of the margin cells of the first and second whorl organs. {ECO:0000269|PubMed:11751640, ECO:0000269|PubMed:15169755}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133866.11e-112PREDICTED: WUSCHEL-related homeobox 3-like
RefseqXP_013740679.11e-112WUSCHEL-related homeobox 3
SwissprotQ9SIB41e-101WOX3_ARATH; WUSCHEL-related homeobox 3
TrEMBLM4C8F61e-111M4C8F6_BRARP; Uncharacterized protein
STRINGBra000484.1-P1e-112(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74802642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.11e-92WOX family protein
Publications ? help Back to Top
  1. Chandler JW,Werr W
    Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.
    J. Exp. Bot., 2014. 65(12): p. 3097-110
    [PMID:24744428]
  2. Niu L, et al.
    LOOSE FLOWER, a WUSCHEL-like Homeobox gene, is required for lateral fusion of floral organs in Medicago truncatula.
    Plant J., 2015. 81(3): p. 480-92
    [PMID:25492397]
  3. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  4. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]