PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1711_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 261aa    MW: 29293.8 Da    PI: 6.2594
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1711_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.24.8e-18176209134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 Cs+Cgt +Tp+WR gp g+ktLCnaCG+++++ +
  RrC1711_p1 176 CSHCGTNTTPQWRTGPAGPKTLCNACGVRFKSGR 209
                 *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.5E-7820261IPR016679Transcription factor, GATA, plant
SMARTSM004011.4E-14170220IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.47E-14173233No hitNo description
Gene3DG3DSA:3.30.50.102.6E-14174207IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.281174206IPR000679Zinc finger, GATA-type
CDDcd002021.04E-15175232No hitNo description
PROSITE patternPS003440176201IPR000679Zinc finger, GATA-type
PfamPF003209.0E-16176210IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MELWTEARAL KASLRGEAIK HQVIVSEELS RTSSAEDFSI ECFLDFSEEG QEQEEGEGLV  60
SVCSSQEEQD CRIFSSEPRI FDQLPSLPDE DVEELEWVSR VVDDCSSPEV SLLFTQTHKI  120
KPSFSSSIPV KPRTKRSRNS LTGGRVWPLV SINQHAAGEQ CKKKKLETAL VFQRRCSHCG  180
TNTTPQWRTG PAGPKTLCNA CGVRFKSGRL CPEYRPADSP TFSNEIHSNL HRKVMELRKS  240
KELGEERGEA TTKSDQVKFG S
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves, less expressed in dark than in light. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527710.0AK352771.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-03-P20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018447802.11e-176PREDICTED: GATA transcription factor 3-like
SwissprotQ8L4M61e-143GATA3_ARATH; GATA transcription factor 3
TrEMBLM4F0P91e-172M4F0P9_BRARP; GATA transcription factor
STRINGBra034644.1-P1e-172(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57392647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34680.21e-144GATA transcription factor 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]