PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC17085_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 255aa    MW: 28127 Da    PI: 8.2255
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC17085_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.7e-0961107354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  r+h+e+ErrRR+ri s +++Lr +l  +      K +Ka+ L k+v+ +k+L
  RrC17085_p1  61 RNHKEAERRRRERISSHLNKLRNVLSCN-----SKTDKATLLAKVVQRVKEL 107
                  58***********************997.....7************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.99958107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-1161118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-761107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-1161118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-864113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2604.7E-4146212No hitNo description
CDDcd048730.00412147213No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MMYSLLTGNQ ISGGGFCLSE DYMSTMPSLC GSSSSTSSYY PLAISGIGER LAQDRAIAAL  60
RNHKEAERRR RERISSHLNK LRNVLSCNSK TDKATLLAKV VQRVKELKQQ TLEISDADQT  120
LLPSETDEIS VLHYGDYSNE GHIIFKVSLC SDDRSDLLSD LMEILKSLHM KTLRAEMVTL  180
GGRTRTVLVV AADKEMHGVE SVHFLQNALK SLLERSSKSL MERSSDAGGG ERSKRSRALD  240
HSIMVCRAGS EITGV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16671ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018474832.10.0PREDICTED: transcription factor bHLH106-like
SwissprotO806741e-134BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A1J3GMC51e-146A0A1J3GMC5_NOCCA; Uncharacterized protein
STRINGBra004599.1-P1e-144(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36422762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.11e-101bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]