PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC16987_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 332aa    MW: 36135.4 Da    PI: 6.07
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC16987_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH201.3e-062272611554
                  HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  ++ ++++ L++l+ +      +K + a++L +A+eYIk L
  RrC16987_p1 227 KMSDRIAALQQLVSPF-----GKTDQASVLSEAIEYIKFL 261
                  899***********98.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.474212261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-4221267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.71E-7222266No hitNo description
SuperFamilySSF474591.83E-11225278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-11226270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MLQENLNLDA TSNANANTTS YQLQESDPSH HQALWRDPHI NNSDFKPQLN MTSSNNRGFF  60
LDHQFSPHGS SSTDSSTVTC QGFSSDNPSN TLYGPTATTP NSSSAMFLHQ QQSNLGYSQF  120
GSSTGNYDQT ATGLRFSNNA TFWSPAATVG NVGPTHHDAS SNFFPALQPP QIHAPSFDEQ  180
PKSISEIRDS SSSEVKSVGL GGDQPAAKRT KSEPASPSPP FKVKKEKMSD RIAALQQLVS  240
PFGKTDQASV LSEAIEYIKF LHQQVSALSN PYMKSGASLQ HQQSDHPKEL EVSEEPDLRS  300
RGLCLVPVSS TFPVTQDTTV DFWTPTFGGT FR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1180540.0AK118054.1 Arabidopsis thaliana At3g20640 mRNA for putative bHLH transcription factor (bHLH123), complete cds, clone: RAFL19-30-D14.
GenBankBT0085800.0BT008580.1 Arabidopsis thaliana clone U50947 unknown protein (At3g20640) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018466226.10.0PREDICTED: transcription factor bHLH123-like isoform X2
SwissprotQ8GXT31e-172BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A078J1B10.0A0A078J1B1_BRANA; BnaA01g36370D protein
TrEMBLA0A398AX140.0A0A398AX14_BRACM; Uncharacterized protein
STRINGBra023939.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40242553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-161bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]