PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC16963_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 124aa    MW: 13781.3 Da    PI: 5.2604
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC16963_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.2e-201263256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 +y+GVr ++ +g+++AeIrd  +    +r++lg+f tae+Aa+a+++a+ +++g+
  RrC16963_p2 12 KYRGVRKRP-WGKYAAEIRDSANH--GARVWLGTFNTAEDAARAYDRAAFSMRGH 63
                 8********.**********5333..3**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.5E-361276IPR001471AP2/ERF domain
CDDcd000182.44E-181271No hitNo description
Gene3DG3DSA:3.30.730.105.2E-321272IPR001471AP2/ERF domain
PROSITE profilePS5103223.5121270IPR001471AP2/ERF domain
PfamPF008472.4E-141263IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-231272IPR016177DNA-binding domain
PRINTSPR003671.3E-111324IPR001471AP2/ERF domain
PRINTSPR003671.3E-113652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MEHRASNTNE VKYRGVRKRP WGKYAAEIRD SANHGARVWL GTFNTAEDAA RAYDRAAFSM  60
RGHKAILNFP HEYPMMRDGP SGGGENAVAS LSLEFGERDG GGGKEVIEFE YLDDSLLEEL  120
LECG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-361211614114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0256081e-58AB025608.1 Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K14B15.
GenBankAY9741961e-58AY974196.1 Arabidopsis thaliana clone At3g23220 AP2/EREBP transcription factor mRNA, complete cds.
GenBankCP0026861e-58CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489994.15e-87PREDICTED: ethylene-responsive transcription factor ERF095
SwissprotQ9LTC69e-42ERF95_ARATH; Ethylene-responsive transcription factor ERF095
TrEMBLA0A0D3D5K11e-75A0A0D3D5K1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6ELV91e-75A0A3P6ELV9_BRAOL; Uncharacterized protein
STRINGBo7g040820.12e-76(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.11e-40ERF family protein
Publications ? help Back to Top
  1. Quan R, et al.
    EIN3 and SOS2 synergistically modulate plant salt tolerance.
    Sci Rep, 2017. 7: p. 44637
    [PMID:28300216]