PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC1679_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

TCP

Protein Properties

Length: 351aa MW: 39439.1 Da PI: 7.2764

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC1679_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	96.3	5.8e-30	63	175	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........................ssssasec 73 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl++ak +++l+ + s RrC1679_p1 63 FGGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLEAAKDDVDKLPPLqfphgfnqmypnlifaessstsafpvsS------- 154 689*************************************************************5555555444444444333222222220....... PP TCP 74 eaesssssasnsssg...................k 89 + + RrC1679_p1 155 --------------PtsafpgtnlgflqswdlggS 175 ..............122233333334444444441 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	29.789	65	123	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	3.0E-28	65	200	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MRSRECDEEE SHQAKQERDH NHNHQVNLNN MLEQHNQPSS VSSSRQWTSA FRNPRIVRVS 60 KAFGGKDRHS KVCTVRGLRD RRIRLSVPTA IQLYDLQDRL GLSQPSKVID WLLEAAKDDV 120 DKLPPLQFPH GFNQMYPNLI FAESSSTSAF PVSSPTSAFP GTNLGFLQSW DLGGSSSRTR 180 SRITETTTTP RESFDLDKGK WIKQDENSNH QEHGFDMNHN HFSLTNPYNN NNTSSYYNLG 240 HLQHSLDQSG NNVTVAISNV PNNNNNNNLN LPPPAMSSLF PTYPSFLGGS HQHHHVVDGA 300 GNLQLFGSNA NTASQQQMMT GNSSLIRPLH HLMSSNNHDM DRHSSDNDSH S

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MRSRECDEEE SHQAKQERDH NHNHQVNLNN MLEQHNQPSS VSSSRQWTSA FRNPRIVRVS  60
KAFGGKDRHS KVCTVRGLRD RRIRLSVPTA IQLYDLQDRL GLSQPSKVID WLLEAAKDDV  120
DKLPPLQFPH GFNQMYPNLI FAESSSTSAF PVSSPTSAFP GTNLGFLQSW DLGGSSSRTR  180
SRITETTTTP RESFDLDKGK WIKQDENSNH QEHGFDMNHN HFSLTNPYNN NNTSSYYNLG  240
HLQHSLDQSG NNVTVAISNV PNNNNNNNLN LPPPAMSSLF PTYPSFLGGS HQHHHVVDGA  300
GNLQLFGSNA NTASQQQMMT GNSSLIRPLH HLMSSNNHDM DRHSSDNDSH S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	3e-19	70	124	1	55	Putative transcription factor PCF6
5zkt_B	3e-19	70	124	1	55	Putative transcription factor PCF6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018455057.1	0.0	PREDICTED: transcription factor TCP5-like isoform X1
Swissprot	Q9FME3	1e-175	TCP5_ARATH; Transcription factor TCP5
TrEMBL	A0A078J6M4	0.0	A0A078J6M4_BRANA; BnaC07g49840D protein
TrEMBL	A0A3N6RHT1	0.0	A0A3N6RHT1_BRACR; Uncharacterized protein
TrEMBL	A0A3P6E5P1	0.0	A0A3P6E5P1_BRAOL; Uncharacterized protein
STRING	Bo7g098260.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3576	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	1e-146	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5

Publications ? help Back to Top
Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]