PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC165_p9

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Nin-like

Protein Properties

Length: 917aa MW: 102251 Da PI: 7.0804

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC165_p9	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91	9.1e-29	605	655	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i le+l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ RrC165_p9 605 EKTIGLEVLRQYFAGSLKDAAKNIGVCPTTLKRICRQHGITRWPSRKIKKV 655 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.029	594	675	IPR003035	RWP-RK domain
Pfam	PF02042	1.9E-24	608	655	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.29E-23	811	903	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.9E-22	814	900	No hit	No description
SMART	SM00666	2.0E-27	816	901	IPR000270	PB1 domain
PROSITE profile	PS51745	28.066	816	901	IPR000270	PB1 domain
Pfam	PF00564	5.9E-18	818	900	IPR000270	PB1 domain
CDD	cd06407	2.73E-40	818	900	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 917 aa Download sequence Send to blast
MEGGSGGGHG GFLPNSSFGA FSDTATNMDF MDELFFDGCW LEATDGKSLK QTTYTSMNDN 60 NNNNSFLYDH ISKVETGRKF PSTTPGSLKI EDLTNQPMNQ VPSEQSTAMI STQAEKFLLE 120 ETERGKRWWI APRARQGPSS SVKDRLVQAI KGLNEAVQDK DSLIQIWVPI QQEGKNFLTT 180 LEQPHSFNPK HLSLKRYRDA SVEYNFLADE DSKESVGLPG RVFLGKLPEW TPDVRFFRSE 240 EYPRIKEAQR CDVRGSLALP VFERGSGTCL GVVEIVRTTQ KMNYKPELEN ICKALEAVNL 300 RSSENLKSPS SEVYDQFYYA ALPEVSVFLT SVCRSYDLPL ALTWAPCARQ GRGGSRHSDE 360 NFSECVSTVD SACFVLDQQS YHFQVACSEH HLLQGEGIVG KAFKATKLFF VPEVTTFSKT 420 NYSLAHHAKI SGLHAALAVP LKNKFNGAVE FVLEFFFPKT CLDTEAQQEM LKSLSVTLQN 480 DFRSLNLIID KELELEVVFP VREELLFSER PLPLEPLPLE EISQEDSSWI SHMLKANEKG 540 KGVSLSWEYQ KEEPKEEFML TSGWDNNNQI GLGHDHSSFD SASFGVGQPL LGSRRPGEKR 600 RTKTEKTIGL EVLRQYFAGS LKDAAKNIGV CPTTLKRICR QHGITRWPSR KIKKVGHSLK 660 KLQLVIDSVQ GVQGSIQLDS FYTSFPELSS QNASFKNNDQ SRHLNALTEN GVSAQGVASR 720 SPPSSSCSHS SGSSTCCSTE ANQSTNTANN TLTTTLMAGN AGEILKRARS EVKLHTVNME 780 ESKPLSRTLS HKTISEHPLF KSSPESRSRS LKAGGASKVK ATFGEAKVRF TLLPTWGFRE 840 LRLEIARRFN IDNNNIAAFD LKYLDDDKEW VLLTCEADLE ECIDIYRSSQ SRTIKISVHE 900 ASQLKLRGSF GSTGPSL

Sequence ? help Back to Top

Protein Sequence Length: 917 aa Download sequence Send to blast

MEGGSGGGHG GFLPNSSFGA FSDTATNMDF MDELFFDGCW LEATDGKSLK QTTYTSMNDN  60
NNNNSFLYDH ISKVETGRKF PSTTPGSLKI EDLTNQPMNQ VPSEQSTAMI STQAEKFLLE  120
ETERGKRWWI APRARQGPSS SVKDRLVQAI KGLNEAVQDK DSLIQIWVPI QQEGKNFLTT  180
LEQPHSFNPK HLSLKRYRDA SVEYNFLADE DSKESVGLPG RVFLGKLPEW TPDVRFFRSE  240
EYPRIKEAQR CDVRGSLALP VFERGSGTCL GVVEIVRTTQ KMNYKPELEN ICKALEAVNL  300
RSSENLKSPS SEVYDQFYYA ALPEVSVFLT SVCRSYDLPL ALTWAPCARQ GRGGSRHSDE  360
NFSECVSTVD SACFVLDQQS YHFQVACSEH HLLQGEGIVG KAFKATKLFF VPEVTTFSKT  420
NYSLAHHAKI SGLHAALAVP LKNKFNGAVE FVLEFFFPKT CLDTEAQQEM LKSLSVTLQN  480
DFRSLNLIID KELELEVVFP VREELLFSER PLPLEPLPLE EISQEDSSWI SHMLKANEKG  540
KGVSLSWEYQ KEEPKEEFML TSGWDNNNQI GLGHDHSSFD SASFGVGQPL LGSRRPGEKR  600
RTKTEKTIGL EVLRQYFAGS LKDAAKNIGV CPTTLKRICR QHGITRWPSR KIKKVGHSLK  660
KLQLVIDSVQ GVQGSIQLDS FYTSFPELSS QNASFKNNDQ SRHLNALTEN GVSAQGVASR  720
SPPSSSCSHS SGSSTCCSTE ANQSTNTANN TLTTTLMAGN AGEILKRARS EVKLHTVNME  780
ESKPLSRTLS HKTISEHPLF KSSPESRSRS LKAGGASKVK ATFGEAKVRF TLLPTWGFRE  840
LRLEIARRFN IDNNNIAAFD LKYLDDDKEW VLLTCEADLE ECIDIYRSSQ SRTIKISVHE  900
ASQLKLRGSF GSTGPSL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189656	0.0	AC189656.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS015K01, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018477356.1	0.0	PREDICTED: protein NLP2-like isoform X2
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	A0A078HS38	0.0	A0A078HS38_BRANA; BnaA03g53210D protein
STRING	Bra017705.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1998	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein