PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC164_p13

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Nin-like

Protein Properties

Length: 267aa MW: 31008.1 Da PI: 5.2653

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC164_p13	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	75.2	7.6e-24	144	190	6	52
RWP-RK 6 sledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 s ed++ yF++pi++AAkeL+v++T+LK++CR++G +RWPhRk++s+ RrC164_p13 144 SREDMKPYFKMPITEAAKELDVGVTLLKKRCRELGFSRWPHRKLTSI 190 689*****************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.587	124	210	IPR003035	RWP-RK domain
Pfam	PF02042	3.4E-20	144	190	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MADDKLLWSW SESFDYESFL QEENLSSLLD QSLPFDYNSF INPFEDYQNE AWFALQDSIN 60 LEPISTCFPA VDDHMSMASV DLEAISTLSQ DVFSELLWNG NASNLNNHVE PAMEIILHDG 120 NSTTKETTRQ KRRYKKDRLI QSYSREDMKP YFKMPITEAA KELDVGVTLL KKRCRELGFS 180 RWPHRKLTSI DGIITNLKDH LGKMKGETNR SNLMNALEIL EAEKKMIEEF PDLEFRDTTK 240 RLRQACFKAN YKRRKLLSSM STTSSVS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018455329.1	0.0	PREDICTED: protein RKD3
Swissprot	Q9FGD1	7e-93	RKD3_ARATH; Protein RKD3
TrEMBL	A0A078G1X7	1e-162	A0A078G1X7_BRANA; BnaA09g07620D protein
STRING	Bra037130.1-P	1e-151	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12180	19	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	2e-93	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]