PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC16491_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Trihelix

Protein Properties

Length: 274aa MW: 30984.9 Da PI: 4.5051

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC16491_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	104.7	6.5e-33	91	176	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k e+ aLi++r+++++++ ++ k+plWee+s+ mr+ gf+r++k+Ckekwen+nk++kk+ke++kkr +++s+tcpyf+ql+a RrC16491_p1 91 RWPKVEIEALIKLRTNLDSKYLENGPKGPLWEEISAGMRRLGFNRNSKRCKEKWENINKYFKKVKESNKKR-PQDSKTCPYFHQLDA 176 8*******************************************************************8.99*********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.34	84	148	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	5.1E-5	84	147	IPR009057	Homeodomain-like
SMART	SM00717	0.0022	88	150	IPR001005	SANT/Myb domain
CDD	cd12203	2.05E-27	90	155	No hit	No description
Pfam	PF13837	8.6E-22	90	177	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MSAAKDAAVM AFLQKFSEKP NQSTAPPQPQ PQTQVNNNNN QHQTSQTPQP PQPPPPPPQP 60 VVVQTLDIVK TDNGDQNMTT QVSASGVSSS RWPKVEIEAL IKLRTNLDSK YLENGPKGPL 120 WEEISAGMRR LGFNRNSKRC KEKWENINKY FKKVKESNKK RPQDSKTCPY FHQLDALYRE 180 RNKYNNNNLA SSSSTKPDNS VPLMVQPEQQ WPPPVTLAHP PPAQPLDQNF DDDEGTDEEE 240 EDYDDEEEDE ENGEEEGGEF ELVPSNDNKT TNNV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC079283	1e-128	AC079283.4 Arabidopsis thaliana chromosome 1 BAC F7O12 genomic sequence, complete sequence.
GenBank	CP002684	1e-128	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018446456.1	1e-124	PREDICTED: trihelix transcription factor GT-2-like
Swissprot	Q39117	9e-59	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A398AB83	1e-105	A0A398AB83_BRACM; Uncharacterized protein
STRING	Bra008285.1-P	1e-105	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6226	27	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	2e-84	Trihelix family protein