PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1635_p6
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 277aa    MW: 31866.7 Da    PI: 10.3773
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1635_p6genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.83.1e-162761997
                -HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3 19 pkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                p +f+ ++ +kk  + +++++ ++g sWev +  +k+++  y+ ++GW++Fv++n L e++fv+F+++g ++f  +v ++
  RrC1635_p6  2 PYNFM-KNVSKKDFHYKMVIRAQWGSSWEVDI--SKNPSFyYMEKSGWNQFVSDNALGENEFVTFTHKGLMCF--NVNIY 76
                89999.5656778999****************..9**999566669********************9988999..66665 PP
2B337.64e-12190268990
                 HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
          B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                  ++ ++ l +pk f e++  +  esk  ++ +++g  sWev +    ++ r+++++GW++ +++  L +gD ++F+l++ +ef
  RrC1635_p6 190 TNSYLKFLAIPKMFEEAYIPD--ESKVYMIHHSEGkGSWEVHC--LVRQTRTIFSSGWSRLAREYPLSVGDRCTFHLVKPTEF 268
                 334445699*****9999433..44344444444449******..8888899************************9986666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.21E-11176No hitNo description
PROSITE profilePS5086312.661179IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-15184IPR015300DNA-binding pseudobarrel domain
PfamPF023623.8E-14275IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-14280IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-8279IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.0E-15179271IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-17180271IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.082182276IPR003340B3 DNA binding domain
CDDcd100173.83E-11183271No hitNo description
SMARTSM010197.0E-12185276IPR003340B3 DNA binding domain
PfamPF023625.1E-10187270IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MPYNFMKNVS KKDFHYKMVI RAQWGSSWEV DISKNPSFYY MEKSGWNQFV SDNALGENEF  60
VTFTHKGLMC FNVNIYGKNG KEIVTPRKPQ TTTPFSGGIK KEEGESSYKD VKKEDESTGG  120
VELEEEKKKA AESKTSKKKS KSKKVEKGES SRGAVPKKKK AEKEKPSKKK KKIKRKKVKN  180
GVPEFKITIT NSYLKFLAIP KMFEEAYIPD ESKVYMIHHS EGKGSWEVHC LVRQTRTIFS  240
SGWSRLAREY PLSVGDRCTF HLVKPTEFVL TSKKARE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157176KKKAEKEKPSKKKKKIKRKK
2167176KKKKKIKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893484e-73AC189348.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB042O03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490034.10.0PREDICTED: B3 domain-containing protein At3g17010-like
SwissprotQ9LSP61e-99Y3701_ARATH; B3 domain-containing protein At3g17010
TrEMBLA0A3N6Q5591e-141A0A3N6Q559_BRACR; Uncharacterized protein
STRINGBra001648.1-P1e-142(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17010.16e-93B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]