PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC1635_p5

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Protein Properties

Length: 298aa MW: 34203.4 Da PI: 10.2292

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC1635_p5	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	60.6	2.7e-19	19	113	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ffk++ ++d +++++ +p +f+ ++ +k+ s +++++ ++g sWev + +k+++ y+ ++GW++Fv +n L +++fv+F+++g ++f +v ++r RrC1635_p5 19 FFKIFQSADLSSESMRAFPYDFM-KNVSKEDFSNKMVIRAQWGSSWEVDI--SKNPRFyYMEKSGWNQFVTDNALGANEFVTFTHKGLMCF--NVNIYR 112 99*99************.6656778999************..**566669****************9988*..999988 PP S CS B3 99 k 99 k RrC1635_p5 113 K 113 7 PP
2	B3	41.1	3.2e-13	205	284	9	93
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 + +++l +pk+f ee+ + ++s+ ++++++g sWev + +++ ++++++GW++ +++ L gD ++F+l++ +ef v RrC1635_p5 205 KKSYLKILGIPKNFYEEYIK--NGSMVYKIRHPEGeGSWEVLC--LGRKTQTIFSSGWSQLAREYPLSIGDRCTFRLVKPTEF--V 284 344456799*******64..4999**99889**..999999***********************9986666..3 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.9E-18	14	115	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.92E-19	14	119	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.06E-17	18	112	No hit	No description
SMART	SM01019	1.8E-23	19	114	IPR003340	B3 DNA binding domain
Pfam	PF02362	9.2E-18	19	113	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.281	19	114	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	3.3E-15	196	291	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.814	197	291	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.28E-16	197	289	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	6.7E-15	200	291	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.6E-10	201	285	IPR003340	B3 DNA binding domain
CDD	cd10017	3.15E-8	207	289	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MVWNRGFGQV KEERKTLSFF KIFQSADLSS ESMRAFPYDF MKNVSKEDFS NKMVIRAQWG 60 SSWEVDISKN PRFYYMEKSG WNQFVTDNAL GANEFVTFTH KGLMCFNVNI YRKNGKEILV 120 PQKPHTTTPF SGIKKEEGER SYKDVKNEDE SMGGGVELAA EAKTAKTKKN AVEIGESSRG 180 AALRNKKAEK IKKKKAVPKF KITIKKSYLK ILGIPKNFYE EYIKNGSMVY KIRHPEGEGS 240 WEVLCLGRKT QTIFSSGWSQ LAREYPLSIG DRCTFRLVKP TEFVLTSRKA KEEIIVID

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018490059.1	0.0	PREDICTED: B3 domain-containing protein At3g17010-like
Swissprot	Q9LSP6	1e-108	Y3701_ARATH; B3 domain-containing protein At3g17010
TrEMBL	A0A3N6Q559	1e-150	A0A3N6Q559_BRACR; Uncharacterized protein
STRING	Bra001648.1-P	1e-149	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM565	21	135

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17010.1	2e-99	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]