PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1631_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 466aa    MW: 49746.6 Da    PI: 7.0744
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1631_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.15e-30145204159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+aed +++++tYeg+H h+
  RrC1631_p1 145 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCAEDMSILITTYEGTHSHP 204
                 58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.3E-32130206IPR003657WRKY domain
SuperFamilySSF1182901.7E-27138206IPR003657WRKY domain
PROSITE profilePS5081128.69140206IPR003657WRKY domain
SMARTSM007741.5E-36145205IPR003657WRKY domain
PfamPF031065.3E-27146204IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MVDLPTATTD LSSLDQEREL VSLSLGRRSS SPNDNTSRKE EKTDAISKEV NADEELTKAG  60
LTLGFNNGSG REPDGGLSVP NQANSSVENS SEDVPGETWP PSKVTGKRSS PEPASGGDVD  120
GDAGQQNPVK RARVCVRARC DTPTMNDGCQ WRKYGQKIAK GNPCPRAYYR CTVAPGCPVR  180
KQVQRCAEDM SILITTYEGT HSHPLPLSAT TMASTTSAAA SMLLSGSSSS SSAAEIMGNN  240
LYDNSRFINN NNSKSFYSPT LHSPLHPTVT LDLTAPQHSS SSLPSLNFNK FPNSFQRFPS  300
ASLNFSSNSS SLNSSILNLP ATWGNGYSSY TPYPYNNVQF GTSNQVKTVQ NNQSLTETLT  360
KALTSDPSFQ SVIAAAISSM VGSNGEQQIV GPRHPISDNV LRTAAMDNNK GRGGYFSSLL  420
MSNTIANNQT SASLDQTSSQ PPPLSMFNNS SSSPSTTSFV NKEEKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21132206174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300780.0KF430078.1 Brassica rapa WRKY transcription factor 72 (WRKY72) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444851.10.0PREDICTED: probable WRKY transcription factor 72
SwissprotQ9LXG80.0WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBLA0A3P6E7H00.0A0A3P6E7H0_BRAOL; Uncharacterized protein
STRINGBo9g165380.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29592868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.10.0WRKY DNA-binding protein 72