PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC16300_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

WOX

Protein Properties

Length: 238aa MW: 27650.9 Da PI: 9.3893

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC16300_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.9	9.4e-20	7	66	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql +Lee++++ r+p+a ++++++++l +++ ++V++WFqN++a++++ RrC16300_p1 7 TRWCPTPEQLMILEEMYRSgIRTPNAVQIQQITAHLafygRIEGKNVFYWFQNHKARDRQ 66 7***************99***********************************996 PP
2	Wus_type_Homeobox	119.7	1.3e-38	6	67	3	64
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 tRW+PtpeQ++iLee+y+sG+rtPn+ +iq+ita+L+ yG+ie+kNVfyWFQN+kaR+rqk RrC16300_p1 6 ATRWCPTPEQLMILEEMYRSGIRTPNAVQIQQITAHLAFYGRIEGKNVFYWFQNHKARDRQK 67 79***********************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	0.0021	4	71	IPR001356	Homeobox domain
CDD	cd00086	1.23E-4	7	67	No hit	No description
SuperFamily	SSF46689	6.84E-11	7	67	IPR009057	Homeodomain-like
Pfam	PF00046	1.8E-17	7	66	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.6E-7	8	66	IPR009057	Homeodomain-like
PROSITE profile	PS50071	9.766	12	67	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MSPVAATRWC PTPEQLMILE EMYRSGIRTP NAVQIQQITA HLAFYGRIEG KNVFYWFQNH 60 KARDRQKLRK KLAKQLHQQQ HHLQLQLQQI QPKSMSMMPQ PLSNIIDHHN HYQHHHNHHR 120 SYDHMSFGCC SQVCNILNCL AHQGIGVEAQ SKVLSEHYCN KSGHEDMLMQ RPITGQNTSY 180 GRDWMMMMDM GPRPSYPSSS VPVPYCNMMM MNSPKIPLKT LELFPISSIN SKQDSSKL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required to initiate organ founder cells in a lateral domain of shoot meristems. Involved in the lateral sepal axis-dependent development of flowers, probably by regulating the proliferation of L1 cells at the lateral region of flower primordia. Required for the formation of the margin cells of the first and second whorl organs. {ECO:0000269\|PubMed:11751640, ECO:0000269\|PubMed:15169755}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189432	9e-83	AC189432.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB068E07, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018481988.1	1e-143	PREDICTED: WUSCHEL-related homeobox 3
Swissprot	Q9SIB4	1e-104	WOX3_ARATH; WUSCHEL-related homeobox 3
TrEMBL	A0A3P6D2D9	1e-119	A0A3P6D2D9_BRAOL; Uncharacterized protein
STRING	Bo4g165520.1	1e-119	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7480	26	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28610.1	2e-96	WOX family protein

Publications ? help Back to Top
Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Niu L, et al. LOOSE FLOWER, a WUSCHEL-like Homeobox gene, is required for lateral fusion of floral organs in Medicago truncatula. Plant J., 2015. 81(3): p. 480-92 [PMID:25492397] Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Guan C, et al. Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis. Curr. Biol., 2017. 27(19): p. 2940-2950.e4 [PMID:28943086]