PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC16275_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ERF | ||||||||
Protein Properties | Length: 140aa MW: 16433.7 Da PI: 11.199 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 29.2 | 2.2e-09 | 114 | 134 | 1 | 22 |
AP2 1 sgykGVrwdkkrgrWvAeIrdp 22 ++y+GVr+++ +g+W+AeIrdp RrC16275_p1 114 KKYRGVRQRP-WGKWAAEIRDP 134 59********.**********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 8.8E-28 | 7 | 140 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
Gene3D | G3DSA:3.30.730.10 | 1.3E-10 | 115 | 139 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 12.391 | 115 | 140 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-4 | 115 | 133 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.95E-6 | 115 | 136 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MEPEKNLVLP KIKFTEHKTN TTRTVPSHHH HQQPRLIRIS VTDPDATDSS SDEEEEHQRF 60 ASKRRRIKKF VNEVVLDSTA TGTTTTSTTQ IEPKRRRKRP VIIKPEPAPA PEYKKYRGVR 120 QRPWGKWAAE IRDPLRRVRL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 62 | 66 | KRRRI |
2 | 92 | 99 | PKRRRKRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018482617.1 | 6e-81 | PREDICTED: ethylene-responsive transcription factor CRF2-like | ||||
Swissprot | Q9SUQ2 | 4e-47 | CRF2_ARATH; Ethylene-responsive transcription factor CRF2 | ||||
TrEMBL | A0A3P6F404 | 4e-73 | A0A3P6F404_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g109100.1 | 1e-73 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23750.2 | 6e-31 | cytokinin response factor 2 |
Publications ? help Back to Top | |||
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