PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC16275_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 140aa    MW: 16433.7 Da    PI: 11.199
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC16275_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.22.2e-09114134122
          AP2   1 sgykGVrwdkkrgrWvAeIrdp 22 
                  ++y+GVr+++ +g+W+AeIrdp
  RrC16275_p1 114 KKYRGVRQRP-WGKWAAEIRDP 134
                  59********.**********7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381238.8E-287140IPR017392AP2/ERF transcription factor ERF/PTI6
Gene3DG3DSA:3.30.730.101.3E-10115139IPR001471AP2/ERF domain
PROSITE profilePS5103212.391115140IPR001471AP2/ERF domain
PfamPF008471.6E-4115133IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-6115136IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MEPEKNLVLP KIKFTEHKTN TTRTVPSHHH HQQPRLIRIS VTDPDATDSS SDEEEEHQRF  60
ASKRRRIKKF VNEVVLDSTA TGTTTTSTTQ IEPKRRRKRP VIIKPEPAPA PEYKKYRGVR  120
QRPWGKWAAE IRDPLRRVRL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16266KRRRI
29299PKRRRKRP
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482617.16e-81PREDICTED: ethylene-responsive transcription factor CRF2-like
SwissprotQ9SUQ24e-47CRF2_ARATH; Ethylene-responsive transcription factor CRF2
TrEMBLA0A3P6F4044e-73A0A3P6F404_BRAOL; Uncharacterized protein
STRINGBo7g109100.11e-73(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.26e-31cytokinin response factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ckurshumova W,Berleth T
    Overcoming recalcitrance - Auxin response factor functions in plant regeneration.
    Plant Signal Behav, 2015. 10(7): p. e993293
    [PMID:26098229]
  4. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]
  5. Jeon J,Cho C,Lee MR,Van Binh N,Kim J
    CYTOKININ RESPONSE FACTOR2 (CRF2) and CRF3 Regulate Lateral Root Development in Response to Cold Stress in Arabidopsis.
    Plant Cell, 2016. 28(8): p. 1828-43
    [PMID:27432872]