PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC16213_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 211aa    MW: 24672.2 Da    PI: 10.415
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC16213_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.1e-151763148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     r+ WT+eEd++l  av+++G ++W t+a+ +  gR + qc +rw k l
      RrC16213_p1 17 RKEWTPEEDDQLRSAVELYGEKDWQTVANALE-GRAGTQCSNRWKKTL 63
                     789*****************************.***********9975 PP
2Myb_DNA-binding50.45.3e-1671115247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      g+++ eE+++l  av+++G  +W++Iar ++ gRt  qc+++w + 
      RrC16213_p1  71 GKFSSEEEKRLTVAVTLFGAQNWHKIARFVP-GRTSTQCREKWANC 115
                      79*****************************.***********886 PP
3Myb_DNA-binding57.33.5e-18123167247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      g+WT+eEd +l +a +++  g+W++Ia++++ +Rt++qc+ rw ++
      RrC16213_p1 123 GKWTKEEDAKLREAMAEHEIGNWSKIASHVP-RRTDNQCRRRWMQL 167
                      89*****************************.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.81E-15467IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.9E-181066IPR009057Homeodomain-like
PROSITE profilePS5129421.9621267IPR017930Myb domain
SMARTSM007175.6E-141665IPR001005SANT/Myb domain
CDDcd001675.20E-111963No hitNo description
PfamPF139214.2E-142081No hitNo description
PROSITE profilePS5129411.64368116IPR017930Myb domain
SMARTSM007171.2E-1169118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-2071121IPR009057Homeodomain-like
CDDcd001671.00E-972114No hitNo description
SuperFamilySSF466896.97E-2797172IPR009057Homeodomain-like
PROSITE profilePS5129425.961117172IPR017930Myb domain
SMARTSM007172.3E-15121170IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-22122167IPR009057Homeodomain-like
PfamPF002493.4E-17123167IPR001005SANT/Myb domain
CDDcd001672.70E-14124167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MIRQFLPKRS LNADILRKEW TPEEDDQLRS AVELYGEKDW QTVANALEGR AGTQCSNRWK  60
KTLHPTRTRV GKFSSEEEKR LTVAVTLFGA QNWHKIARFV PGRTSTQCRE KWANCLDPNV  120
NHGKWTKEED AKLREAMAEH EIGNWSKIAS HVPRRTDNQC RRRWMQLYPH QVPLLQEATR  180
LRKEAIFLAL PEIPLEPEPE TVGLKKKKRK A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C9e-3111648155MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-3111648155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209KKKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489681.11e-125PREDICTED: snRNA-activating protein complex subunit 4 isoform X1
RefseqXP_018489683.11e-125PREDICTED: snRNA-activating protein complex subunit 4 isoform X2
RefseqXP_018489684.11e-126PREDICTED: myb-like protein L isoform X3
TrEMBLA0A0D2ZRC11e-121A0A0D2ZRC1_BRAOL; Uncharacterized protein
TrEMBLA0A397ZEI11e-122A0A397ZEI1_BRACM; Uncharacterized protein
STRINGBo00828s010.11e-122(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65042744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.25e-88myb domain protein 4r1