PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC16212_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | B3 | ||||||||
Protein Properties | Length: 253aa MW: 28422.9 Da PI: 9.8724 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.5 | 6.4e-15 | 19 | 112 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ffk+l +d +++++ +p++f ++ + k + + ++tl+ +g +W+v+l + g y+++ kGWk+F ++n+L + +f++F+ +g+++ +v ++ RrC16212_p2 19 FFKILADEDLSSESMRLIPNEFWTRSECK-NLPPKVTLKVAWGSTWTVNL--STFMGFYLMErKGWKKFLSDNHLGDDEFLTFTNQGNNCI--TVDIY 111 99********************9888544.56779***************..888888655549********************6665555..66666 PP - CS B3 98 r 98 + RrC16212_p2 112 Q 112 5 PP | |||||||
2 | B3 | 48.5 | 1.5e-15 | 169 | 248 | 11 | 96 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 + + +l++p +fa+eh+ k + + ++ d++g+ W+v++ + + ++++GW+ +k gL +gD ++F+l++ +e+v+ v RrC16212_p2 169 SHLTLLIIPLDFANEHMPK--GRAKFVIHDPKGKPWDVTY--VPSNASKLFSSGWRILAKGYGLAVGDLCTFRLVK--PKEMVLEV 248 445679**********733..6679***************..88888899***********************986..44456555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.0E-16 | 15 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.88E-15 | 17 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.84E-13 | 18 | 111 | No hit | No description |
PROSITE profile | PS50863 | 12.182 | 19 | 114 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.2E-13 | 19 | 112 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.7E-12 | 19 | 114 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.3E-19 | 153 | 250 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.32E-19 | 155 | 250 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.253 | 159 | 252 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.51E-13 | 162 | 249 | No hit | No description |
SMART | SM01019 | 2.1E-14 | 162 | 252 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-12 | 167 | 246 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MARNRAFGRL QEDMNKTSFF KILADEDLSS ESMRLIPNEF WTRSECKNLP PKVTLKVAWG 60 STWTVNLSTF MGFYLMERKG WKKFLSDNHL GDDEFLTFTN QGNNCITVDI YQKNCIEILK 120 PLNTSSSKKS CVDPVIAESK MKKKVDSNVN GASSSSSSAA TFSLTIKKSH LTLLIIPLDF 180 ANEHMPKGRA KFVIHDPKGK PWDVTYVPSN ASKLFSSGWR ILAKGYGLAV GDLCTFRLVK 240 PKEMVLEVLH ASP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018482867.1 | 1e-176 | PREDICTED: B3 domain-containing protein At5g18090-like isoform X2 | ||||
TrEMBL | A0A078H0V8 | 1e-153 | A0A078H0V8_BRANA; BnaA04g25590D protein | ||||
STRING | Bra037663.1-P | 1e-150 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35310.1 | 3e-51 | B3 family protein |