PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC16090_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | Trihelix | ||||||||
Protein Properties | Length: 109aa MW: 12185.4 Da PI: 9.6571 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 43.1 | 1.1e-13 | 33 | 105 | 2 | 70 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekk 70 W+++ + +Liea ++ +l+rg+l++++W+ev++++ g ++ +qCk++++ l+k+yk +k+ ++ RrC16090_p1 33 WSEDATATLIEAWGDRYVHLSRGNLRQNDWKEVADAVnsrhGGNGRPKTDVQCKNRIDTLKKKYKTEKAKPSS 105 *************************************9744445567799*****************987665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 6.5E-23 | 31 | 108 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 0.001 | 33 | 100 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
METTPETQPK SQSQSTGGGG SSHRVPPGRE DWWSEDATAT LIEAWGDRYV HLSRGNLRQN 60 DWKEVADAVN SRHGGNGRPK TDVQCKNRID TLKKKYKTEK AKPSSSSWC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013647509.1 | 8e-58 | trihelix transcription factor ASIL2-like | ||||
Swissprot | Q9LJG8 | 3e-30 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A397ZGB4 | 4e-52 | A0A397ZGB4_BRACM; Uncharacterized protein | ||||
TrEMBL | A0A3P5YYR3 | 4e-52 | A0A3P5YYR3_BRACM; Uncharacterized protein | ||||
TrEMBL | M4F1C0 | 4e-52 | M4F1C0_BRARP; Uncharacterized protein | ||||
STRING | Bra034866.1-P | 6e-53 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4926 | 21 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11100.1 | 2e-47 | sequence-specific DNA binding transcription factors |